| mature miRNA: TATACTCACTCCGTCCCAATT species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|115273253|gb|EG011489.1|EG011489 SSBN003D20u SSBN Solanum tuberosum cDNA clone SSBN003D20, mRNA sequence TATACTCACTCCGTCCCAATT EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTGCCAACCTACAATTTCTAGGCAGGAGACACTTTCTTCTGTCACTTTTCAGGTTTAATTTGCTCTCTTCTGTTACCATGTGTTTTTGGTTTTCTTGATTTCACTTTTCAGGTTTTGCTCTCTCCTAGTTTTAGTTTTAAAACAATTATCTCAAAATAAGTGTCGTCAATTCAAAATCAAAATGGATAACATTAAACGACGGTTAAAATGGGACGGAGGGAGTATTAACTTTGTGGTTGAAGAGATGGGAATTTGGAGAACTTGAGTAAATTCTCAGAAGGGAATTGAATGGAAAAATGAGAAAAGAAAGTTTCTGTTAATTCATAAGTAAAATTGTTTAGGTAGAAACTCTAGTGAGAGAAGGAAAAGGGGGAAAGGAAAAGGAAAAAAATAACAATCTTTTGCTATAGTATTTTAAACTGTTTTTGATCGAGTGTG | |||||||||
gi|282168008|gb|GT982755.1|GT982755 H2-800 Potato tubers 24 h infected with Fusarium eumartii Solanum tuberosum cDNA clone H2-80 TATACTCACTCCGTCCCAATT EST sequence (targeted fragment marked with yellow): ACAGACGGCATCCACCGGAGAATTCGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGAGTTCTGTATGTAAATCGTGGAAATTCATTGTTTCCGATAATCGGCTATGGATTTACTTTCTTCAGAATCAGCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGTCCTCTTCGGACGTTTCCAAATTCAGTACCAGAACTGTCATTCATGAGTATTTATGGTCAACGCGCTCAAGTGCCCGGTGCTATTATCATTGACGGTGGGTCAGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTCTTGGAATTTGGCAATATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACAATATACACCACGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCAATTTGCCATTACGATGATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGAAATGAATGTTCCTGCTGTTTGTGCTGTCAACCA | |||||||||