| mature miRNA: TGACAGAAGAGAGAGAGCAC species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78747330|gb|DV623733.1|DV623733 93197.1 Cold Sweetening C Solanum tuberosum cDNA clone 93197 5', mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TGTCTAAAATCTCACTAATTCCAAAATCTTCATGAAACATAAACAGGGAACTTTTGATCACAAGTCTTTCTTGAAAACAAAAATACATTGCAAATGTAAAAGCTGGTGAATTAACTAACTGGGTCCTTCAAACATCAATAGTGGCGGATACAGGCCTCACTTCTTCTTTTCACCACCTCCAGTAGCCCTCATCTTGCGGAGAACACTAGACATCTCTTCTCTCTTCCTCTTCGCCCTCTTGTGAGTACCCAACTTCCTCTTGGCTACCTTCAAGGCACGCTTGTCCTTTCCAACTTTAAGAAGCTCAGTGATCCTCTTCTCGTATGGAGCAAATCCAGCAACTTCTCTGATAAGACTCCTCACAAAGTGGATTCTTTTGCTTGTTTTCCCTTTTCTGTCAGAAGGGCGTGGAGCTAATTCCTTCTTGGTCACAACATGGCCTTTGTTTAGGCCAACAGATAGCCCTGTATTCGGCTGTTTTGGAGCCATCACCTCTTCAATCTGTTGGG | |||||||||
gi|78748824|gb|DV625227.1|DV625227 95541.1 Cold Sweetening C Solanum tuberosum cDNA clone 95541 5', mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGTGGATCCCGCGCTGCAGGCTAAATCCATGGAGAAAAATGATGACTTTTTGGTAATTCCACTAGTGAAAATGCTAAGAAAAAAATCATTACAACAAATAATAATAACAACTAGAAATTATCATCATCATCAAATTCTTCTTCTTCTTCTTCACTAATAAGAAGTTGTCAAGCTGAGAAATGTAATGTTGATTTAAGTGATGCTAAGCAATACCATAAGAGGCATAATGTCTGTGAATATCATGCTAAAGCTCAAGTCGTCGTCGTCGCTGGACTCCGCCAACGTTTCTGTCAGCAATGCAGCCGATTTCATGAGCTAACGGAATTTGATGAATCGAAAAGGAGTTGCCGGGAGACGTTCGGCTGGACACAAGGAAAGGCGAAGAAAGAGTACATCGGCGTCATCGTCTTCATCATCTACAGATCAGTCTCATAGAATTCATATATCTATCCAAGAAAATTCAAGTTCACAAAAATTTCCACCTACGTTGACTAAAATGCATATCCTATTTAATAAATTTGCTCTCTCTCTTCTGTCATAAATCTGTTTCTAAGATAATATTCATCATTCACATACCATCCCG | |||||||||
gi|115275724|gb|EG013960.1|EG013960 SDBN004L07u SDBN Solanum tuberosum cDNA clone SDBN004L07, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATGCTGCTCGAGCGGCCGCTCTCCTTACTGACTGCAACTTAATTGTAGGTTACTTCTTCAGAAGATGCTTCTTGAATTATGGTGTTGCGATGCTAGCAGCTGGATGTGTTATTCCATGATGCTGTTCTCACTCTTCTTTCAGAGTGGGGTTTTATAGATTTATCGTTCTCCGAGTGTAATTACTTTTATGTGTCTCTTTCTCAGACACTTTAATACACTCTGAGTGTAGTGGTCATTATGTGTAGCGTGTAAAAGTGCTCTTTCTCCTCATAGATATTAAGAAGATAATATGTTAGCCGCTGTGCGGGTCAATTACATTCTCTATATTAATATAGTGGAAATAAAAGAGTGCCCCCC | |||||||||
gi|66839148|gb|DR037253.1|DR037253 48828.2 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 48828 3', mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTGAGTCACATGCTGCAGCAGCCTGCCTCTATCCCGCGTTCCCAGTCACAGGGCCTGCAGTATGATGGTCTAAGCCATTTCCCTTTTGCTCAAGATTTCAATAGCAAACCTCAAGATTCACATGTTAGCAACAGCAGCAGCCCTCTCCATTTCCATGATATGTTGCAAAATGCACAAGATGGATCATCTACAAGTGGTGGCTCTCAGCAAACACTAGCCTTTATGTGGGACTAAACTTTTAACATCAAGGATATTCCGTTAATCTTGAATCCATCCAACCACATGGTATTCCATTTCAGAATGTTTAGCTTCTAATTAGAGTCGAATGTTTGTGTGATATATCACTTTTC | |||||||||
gi|115277633|gb|EG015874.1|EG015874 SSBN002B03u SSBN Solanum tuberosum cDNA clone SSBN002B03, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTCAGCTATCTGGTATTATACAACCGATCACATATGAATGGTATAGACAGTCAAAACTCGTTCCCTGGTTCTTCGGGTCATAGCTATACAGGAGGAAGCCAATTCCAGTTCATGCAAGGCAGTGATCATAGTCTGACTGAATCTTCTTCAATCTGCCAGCCACTTTTTGAACATCCCACTTCTGCAGCAGGAATTTCTAGCAGCGGACAAAAGATCTTCTCCAGTGGATTAAATGATATTGTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTGAGTCACATGGTGCAGCAGCCTGCCTCTATCCCGCGTTCCCAGTCACAGGGCCTGCAGTATGATGGTCTAAGCCATTTCCCTTTTGCTCAAGATTTCAATAGCAAACCTCAAGATTCACACGTTAGCAACAGCAGCAGCCCTCTCCATTTCCATGATATGTTGCAAAATGCACAAGATGGATCATCTACAAGTGGTGGCTCTCAGCAAACACTAGCCTTTATGTGGGACTAAACTTTTAGCATCAAGGATATTCCGTTAATCTTGAATCCATCCAACCAAATGGTATTCCATTCCAGAATGTTTAGCTTCTAATTAGAGTCGAATGTTTGTGTGATATATCACTTAACTTTTCTATATTTTCC | |||||||||
gi|66839669|gb|DR037774.1|DR037774 50083.2 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 50083 5', mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTGACAGATTGCAGAGGCTGCAAGTAAGCTTGGAATGCTAGTAATATCAGATGAAGCCTATGGTCATCTAGTGTTCGGTAGTAATCCGTTTGTGCCAATGGGCGTCTACGGAGAAATTGCACCTATTCTGACAATTGGCTCCATATCAAAGAGATGGCTGGTTCCTGGTTGGCGATTTGGTTGGATTGTGATGTGCGATCCCAATGACATCCTTAAAAAACACGGGGTTGCGGAGTCTATCAAGAACTACCACAACATTGGTGTTGTACCTCCTACACTCACTCTGGGTGCAATTACTCGTATTCTTGCTGAAACACCTGAAGATTTCTACTCAAATACCATAAACCTACTGAGAAAAGCAGCAGACATTTGCTATGCTGGTCTAAGGGAGATTCCGTGCTTTACTCCATACAAGTCACAAGGATCCATGTTTCTTATGGCAAAACTAAACATGTCATTTCTGGAAGGCATCGACAATGATATGGAATTCTGCACTAGGCTTGCTAGAGAGGAATCTGTAATTGTTCTACCCGGAGAAGCACTTGGATTGAAGAATTGGGTTAGAGTTACTTTTGCTGTGGAAATTTCAGCTCTTGAGGATGGCCTTAGCAGGATCAAAGCCTTTTGTTTCAGAAATGCCAAACAGCAATAAGCCTTTTTTCTCTTCTGTCAACTTTGTCAAAACTTGGTCCAAGTCTTCCACAAAACAAATACTAATAAAAGTTGTAGGAGTTGATATGATGATTTCTACATGACAATTCGCGTTATAAACA | |||||||||
gi|78746478|gb|DV622881.1|DV622881 92279.1 Cold Sweetening C Solanum tuberosum cDNA clone 92279 5', mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTGCCAATGGGCGTCTACGGAGAAATTGCACCTATTCTGACAATTGGCTCCATATCAAAGAGATGGCTGGTTTCCTGGNTTGGCGATTTGGTTGGATGGTGATGTGCGATCCCAATGACTTCCTTAAAAAACACGGGGTTTGCGGAGTCTATCAGAAACTACCACAACTTTGGTGTTGTACCTCCTACACTCACTCTGGGTTGCAATTACTCGTTATCTTGCTGAAACACCTGAAGATTTCTACTCAAATACCATAAACCTTACTGAGAAAAGCAGCAGACATTTGCTATGCTGGTCTAAGGGAGATTCCGTGCTTTACTCCATACAAGTCACAAGGATCCATGTTTCTTATGGCAAAACTAAACATGTCATTTCTGGAAGGCATCGACAATGATATGGAATTCTGCACTAGGCTTGCTAGAGAGGAATCTGTAATTGTTCTACCCGGAGAAGCACTTGGATTGAAGAATGGGTTAGAGTTACTTTTGCTGTGGAAATTTCAGCTCTTGAGGATGGCCTTAGCAGGATCAAAGCCTTTTGTTTCAGAAATGCCAAACAGCAATAAGCCTTTTTTCTCTTCTGTCAACTTTGTCAAACTTGGTCCAAGTCTTCCACAAAACAAATACTAATAAAAGTTGTAGGAGTTGATATGATGATTTCTTACATGAAAACAAAAG | |||||||||
gi|115274088|gb|EG012324.1|EG012324 STDB003A20u STDB Solanum tuberosum cDNA clone STDB003A20, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTAGAATGTAGACTTGAACTTGAAAGTTGAGCAAAATGTCACAATCTTAATGAAAATTCAAAGCCATAATTGTGTCGAAGTCTAGAGAATTTTATAGCTAATTCAAAAAGATCATGTATAATAACTAATAAACTCAGTTCCTCAATTGTCAAAATATGGATAAAGACTTCACTTCTTCTTTTCACCACCTCCGGTGGCCCTCATCTTACGGAGAACACTAGACATCTCCTCTCTCTTCTTCTTTGCCCTCTTGTGGGTACCCAACTTCCTCTTGGCAACCTTCAATGCACGCTTGTCCTTGCCAACTTTAAGAAGCTCAGTAATCCTCTTCTCATATGGAGCAAATCCAGCAACTTCTCTGATGAGGTTCCTAACGAAGTGGATTCTTTTGCTTGTTTTCCCTTTTCTGTCAGAAGGGCGTGGAGCTAGCTCCTTCTTGGTTACAATGTGTCCTTTGTTCAATCCCACGGCTAATCAGCGGCCGC | |||||||||