| mature miRNA: TGACAGAAGAGAGTGAGCAC species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|115274687|gb|EG012923.1|EG012923 STDB001D19u STDB Solanum tuberosum cDNA clone STDB001D19, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CCACAAAAGAGGATAAAAACTTGATACAAAAGAAGAAGAAAAAATAATAATCTTGAAGCATATGTTTCAACATTACTATAAATTACAAGTCACGTTGCTGATGATCACTATCTTCTAAGTTTCCAATAACATCCTCACTCTCTTCTTTCAGAACGGTTTCTTCGTCTAAGTCGTCTGTGAAAGAAACTTTTGCACGCCAGTTTTGCTATCATCAGTTGCATGCATTATCATTTGAGCCGGTGGCATTGACAACGGTATCCATCATCCCTGACAGAGCCTGTCTAGGAGACTACTCGAGCACATCATCGATAATGTTGGAAACTCGGNTTC | |||||||||
gi|115277633|gb|EG015874.1|EG015874 SSBN002B03u SSBN Solanum tuberosum cDNA clone SSBN002B03, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTCAGCTATCTGGTATTATACAACCGATCACATATGAATGGTATAGACAGTCAAAACTCGTTCCCTGGTTCTTCGGGTCATAGCTATACAGGAGGAAGCCAATTCCAGTTCATGCAAGGCAGTGATCATAGTCTGACTGAATCTTCTTCAATCTGCCAGCCACTTTTTGAACATCCCACTTCTGCAGCAGGAATTTCTAGCAGCGGACAAAAGATCTTCTCCAGTGGATTAAATGATATTGTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTGAGTCACATGGTGCAGCAGCCTGCCTCTATCCCGCGTTCCCAGTCACAGGGCCTGCAGTATGATGGTCTAAGCCATTTCCCTTTTGCTCAAGATTTCAATAGCAAACCTCAAGATTCACACGTTAGCAACAGCAGCAGCCCTCTCCATTTCCATGATATGTTGCAAAATGCACAAGATGGATCATCTACAAGTGGTGGCTCTCAGCAAACACTAGCCTTTATGTGGGACTAAACTTTTAGCATCAAGGATATTCCGTTAATCTTGAATCCATCCAACCAAATGGTATTCCATTCCAGAATGTTTAGCTTCTAATTAGAGTCGAATGTTTGTGTGATATATCACTTAACTTTTCTATATTTTCC | |||||||||
gi|66839148|gb|DR037253.1|DR037253 48828.2 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 48828 3', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTGAGTCACATGCTGCAGCAGCCTGCCTCTATCCCGCGTTCCCAGTCACAGGGCCTGCAGTATGATGGTCTAAGCCATTTCCCTTTTGCTCAAGATTTCAATAGCAAACCTCAAGATTCACATGTTAGCAACAGCAGCAGCCCTCTCCATTTCCATGATATGTTGCAAAATGCACAAGATGGATCATCTACAAGTGGTGGCTCTCAGCAAACACTAGCCTTTATGTGGGACTAAACTTTTAACATCAAGGATATTCCGTTAATCTTGAATCCATCCAACCACATGGTATTCCATTTCAGAATGTTTAGCTTCTAATTAGAGTCGAATGTTTGTGTGATATATCACTTTTC | |||||||||
gi|78748824|gb|DV625227.1|DV625227 95541.1 Cold Sweetening C Solanum tuberosum cDNA clone 95541 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AGTGGATCCCGCGCTGCAGGCTAAATCCATGGAGAAAAATGATGACTTTTTGGTAATTCCACTAGTGAAAATGCTAAGAAAAAAATCATTACAACAAATAATAATAACAACTAGAAATTATCATCATCATCAAATTCTTCTTCTTCTTCTTCACTAATAAGAAGTTGTCAAGCTGAGAAATGTAATGTTGATTTAAGTGATGCTAAGCAATACCATAAGAGGCATAATGTCTGTGAATATCATGCTAAAGCTCAAGTCGTCGTCGTCGCTGGACTCCGCCAACGTTTCTGTCAGCAATGCAGCCGATTTCATGAGCTAACGGAATTTGATGAATCGAAAAGGAGTTGCCGGGAGACGTTCGGCTGGACACAAGGAAAGGCGAAGAAAGAGTACATCGGCGTCATCGTCTTCATCATCTACAGATCAGTCTCATAGAATTCATATATCTATCCAAGAAAATTCAAGTTCACAAAAATTTCCACCTACGTTGACTAAAATGCATATCCTATTTAATAAATTTGCTCTCTCTCTTCTGTCATAAATCTGTTTCTAAGATAATATTCATCATTCACATACCATCCCG | |||||||||