| mature miRNA: TTCCACAGCTTTCTTGAACT species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78751165|gb|DV627568.1|DV627568 98213.1 Cold Sweetening C Solanum tuberosum cDNA clone 98213 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CCTATTGAAAATAGATTTCCCTTGCTTCCACTTCCCCCACGCACCATTAATGAGGCACTTCCCCTAACAAAGAAATGGTGGCCATCTTGGGATCCACGGACAAAGTTAAATTGTTTGCAAACAGCTATTGGAAGTGCAAGATTGACTGATAGGATCAGGAAAGCTGTGGAGGCCTTTGACGGTGAGCCACCTATGAGGGTGCAAAAGTTTGTTCTTGATCAATGTCGGAAGTGGAATTTGGTGTGGGTTGGGAGAAACAAAGTTGCTCCTTTGGAGCCAGATGAATTTGAAATGCTATTGGGGTTTCCAAAGAACCATACCAGGGGAGGTGGTATAAGTAGGACCGATAGATACAAATCGCTTGGTAACTCATTCCAGGTTGACACAGTGGCATACCATTTATCAGTGTTGAAAGACATGTTTCCAAATGGGATGAACGTCTTATCACTCTTCTCTGGGATTGGCGGTGCTGAAGTTGCTCTTTACCGTCTTGGGATTCAACTAAACAATGTGGTCTCTGTGGAAAAATCTGAAGTGAACAGAAACATTGTGAGAAGTTGGTGGGAGCAAACTAATCAGAGAGGCAATCTTATTGATTTTGATGATGTGCAGCAGTTGAATGGAGACCGCTTGGAGCAACTGATAGATTCATTTGGCGGATTTGATTTACTGATTGGTGGAAGCCCGTGCAACAATCTTGCAGGCAGTAACACCGTGAGCACGGACGGTCTTGAAGCAAAAATCGTCTCTATTTATGACTATTTCGGATACT | |||||||||
gi|78747071|gb|DV623474.1|DV623474 92918.1 Cold Sweetening C Solanum tuberosum cDNA clone 92918 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): AACAAAAAAAAAACATCAACCTATCATGGCAGCTCACAGCTCAACTCTCACCATATCCCTACTTCTCATGCTTATCTTCTCCACCTTATCCTCCGCTTCCGACATGTCAATTATTAGCTACGACGAGACTCATATTCACCATCGTTCCGACGATGAAGTTTCGGCGTTGTACGAGTCCTGGCTAATTGAGCACGGAAAATCGTACAACGCTTTAGGGAGAAAAGGATAAGAGATTCCAGATCTTCAAGGATAACTTGAAATATATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGCACTAAGAGTTCCGGTGACCGGAGGAAGTTGTCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAGTTGACTGGAGAGATAAAGGTGTGCTTGTTGGTGTGAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCCGTTGCTGCCATGGAATCAATAAATGCGATAGTAACCGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAACGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATCAATAATGGCACGAATTGACACTGAAGAAGACTACCCTTACAAAGAACGTAATGACGTATGGCGACCAATATAGGAAAAATGCCAAGGTTGTTACAAATAGATAGGCTATGAAGAATGTTCCTGGTTAATAACAGAAAAGGGCGCTACAAAAAGGCTGTTG | |||||||||
gi|160518249|gb|AM906731.1|AM906731 AM906731 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 7O18, mRNA seq TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAAAATTAAATCCCCAAGGAATAGTTCTGTAAAGCTGTCGAAATGAAGGTAGATCAGCAAAGTTGAAGTGATCGAGCTTTCGTTGGAAATATTTGGTCTCATACTGGTTCCTGTGCATGGAAATTTCCTTTTTTCCTAAGCAAAGTAGAATTATTTTGTCATCGTATTTGCTAAGTTCGCTGTTCATTGTAGCTTCTTCTTTCCTTAGCAAGATTGTTATGTTTTTCTGTTGGTGATCTATGATAATGTTGATGGCGAGGTGCCTTATCGAGATCTGCAAGTAGCTCATATTGAGAGTTTCAGGTAATATAAAGGATGTACGCCCCTTATATACTTTGTTTCGCTGGAGTATCAAGTATGGGGAACGGAAGAGGTCTACAGACTGCATCTCATATTAATAATAGACCACTTGCACATGCTGCCACGGGATCAAAGAGCGCTAGATATGAACCACTTTCGTATGCCATTTTAAACCTTCAACGGAGTTAAATTTTACTTCAGAGTCTCACTCCAACTTCTCAAGTTCTTTCAATTGTTTACCTGGTCAGACGAAGAGAAGCCGACATTTTTAGTATGTGCTCTTTCTACGTCCCCAGATTAAGAAGCATAAGATAGGTAGATCATGAGCTCTTGAAGACTAAGTTGTTGTATTATATGTTAAATGTAATAAAAGGATTTTG | |||||||||
gi|280982630|gb|GT888890.1|GT888890 VB_D01-100 Potato tubers 24 h infected with Fusarium eumartii Solanum tuberosum cDNA clone V TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): ATGGTAGCTCACAGCTCAACTCTCACCATATCCCTACTTCTCATGCTCATCTTCTCCACCTTATCCTCCGCTTCCGACATGTCAATTATTAGCTACGACGAGACTCATATTCACCATCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTCCAGATCTTCAAGGATAACTTGAAATATATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGTACGAAGAGTTCCGGTGACCGGAGGAGGTTGTCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAGTTGACTGGAGAGATAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCCGTTGCTGCCATANAATCAATAAACGCGATAGTAACCGGGAATTTGATATCNCTATCNNAGCANGAGTTGGTGGATTGTGATAAGTCNTACAATTCA | |||||||||
gi|66837825|gb|DR035930.1|DR035930 20190.2 Swollen Stolon Solanum tuberosum cDNA clone 20190 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): AACAGGTTGACTATGTCAATTCTATGAGGGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAGATGGAGGTCTTCCCGTATGCAGTGTNNNTATATGTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTGGTGCTGTATTTATTGTATGCTTAATTATCACTTGTAGTTTTTGGACTTCAGCAATTATCTTGCTTGTGCTGACCATGATTGTTCTGGATCTTATGGGAGTAATGGCAATTCTAAATATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCGCTGACTACTATGGGCGCTTCTGTATTCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTTTCAAGGACAGAAGTTTTTGTGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTCCTTGGTTTTCTACACGGGCTTATATTTTTACCTGTACTATTAAGCATTTTTGGTCCGGCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGGACATCTACATCTTCCCAATTCCTAATCTAATCAGGTGTAAAGGAGTCTCCTCGGTAGGAAATATATCCTTTTTGTTCCAAAAGCCACGACTTGATGTTTGATCCATTAGATAACAAGGCACGAATAATTGGGTGGATCTTACCTTACAGACACAATTCCTGATTACAAGCTAATGCTTTAAAAAGAGTTACCTTTTGTAGGGATACTAATCTTCCTTTCCCCTAAATTGGGGGTACTCAAGGGACCCCTTAAATGTCCATGGGCGCATTTATAACATTTTAGGAAAAAAGCCCTTCCGGCAATAAGTTTGGTAAAACTGTGGAACGTCAACTCGACACTTAATTTCCTCTGCGAAAGCACGGCAACACGACACGGCCACAACCCAACTCTCGGGTCCCCAGCCTCCGAAAAGAAACAACAAACCCGCGGGGG | |||||||||
gi|160518067|gb|AM906684.1|AM906684 AM906684 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 7H14, mRNA seq TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAATTGCTTTGGCTAGGAAGCCAGGAGAAGCGCTCTTGCTTTGGAATGAGATAAAACAGAGGTGCGGAATGGGAAATGGAGAGGAGTCTATTCCCTCTTCAGGCGTCCCGCCATTGGAACCTGATGAAGGACTGTTGGATACTTTGGCAGATATATGTGTCAGGGCGGCTTTCTTCAAGAAAGCTTTGGAAATCGTTGCTTGCATGGAGCAACACGGGATACCACCAAATAAGACCAAGTTTACTAGGATCTACGTCGAGATGCATTCAAGGATGTTTACTAGTAAGCATGCGTCGAGAGCTAGACAGGACAGGAGAAAGGAACGCAAACGAGCAGCTGAAGCATTCAAGTTCTGGTTAGGATTGCCCAACTCCTATTATGGAAGTGAGTGGCGCCTTGATTCAGTAATCGACGATGAATACAAATCCGAATAATTGAAGATGAAAACATAGGTATTAAACTTGAATATATAGATTTGAAAGTTTGTTGTGTTATACACAGTTGAAATATAATCTGATACAGCTTTCTCCTCGATTATAGTATAGTTGGAAGGCAGGAATTTAATGTAATGAAGCCCTGATATAACCACACTCTGTATTCTATGTATGATGATCAATAGCAATTATACTTTTTTGTTTT | |||||||||
gi|78746558|gb|DV622961.1|DV622961 92363.1 Cold Sweetening C Solanum tuberosum cDNA clone 92363 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GTCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCGTTTGACTGGAGAGATAAAGGTGTGCTTGTTGGTGTGAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCGGTTGCTGCCATGGAATCAATAAACACGATAGCAACCGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAAGTCGTACAATCAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATCAATAATGGAGGAATTGACACTGAAGAAGACTACCCTTACAAAGAACATAATGGCGTATGCGACCAGTATAGGAAAAAGGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGCTACAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCAATTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTTACTGGAAAATGTAGTACTGCAGTGGATCATGGTGTAGTTGTTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCATTAGGAACTCATGGGGAGCTAAATGGGGAGAGAAGGGCTACCTCAGAGTCCAACGTAACGTTGCCAGGTCTAGTGGCTGTGTGGTT | |||||||||