| mature miRNA: TTGGCATTCTGTCCACCTCC species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78747055|gb|DV623458.1|DV623458 92900.1 Cold Sweetening C Solanum tuberosum cDNA clone 92900 5', mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): CTGGTTATTCATGTATTATTATTCCACCTTTATTCTGCATAAAATAATACATAGATGCCTAATAATTTATATATATATATATATATATATATATATATATATATTAGTTATGCGGCTTTAGATTGTCAAGCAAACGTCGTATTNAATTTTATTACATGAANATTACTTGTTTCCTTTTCTATTCTACCAAAGCGNNTCGTATAAGTTATTATGNNGAAATTAATATTGGATAACTTGGGTTTCTTATTGTAGGGTACCAAACGAAACCCCTTAAGGGCNNTAAACCCGTNNTCTACACATTATTAAAACCCGTTGGGTAATCTATCTCAGGGTTCTGTAGTTCTCNTTTCANNAAATTCAGTTACATTAATTTTANTTCNNTTTTTCTTTCGAGTTGTGAACGAAAGGAATTTGATTAGGTCACAAATTGAGATGAATGGGAATAATTGGATGGCTGCTCATGCTCGGGGAGGTGGTGAAGGTGCCAGAGCTGCTGCCGGTGATTGGCGGACTGGACTTGTGCCCTATACTCGTCAAAGGATTGTCAACAAAATATTGGAGGACATTCAGAGGGTTTTTCCTGTCTTTAGGCATCGGCATGTACAGGAACTTAGGGAAATTGCAGTGATGTTTGAGGAAAAGATGTATAATGTTGCTACAAGTTGGAATGATTATCTGTATAGAATATCCTTTAAACTGCGGACAATGACCAATTGTTTTCATATCAATACTGCAAGTAGGTGGTCAGAATGCCCATGGGTCCAG | |||||||||
gi|78750338|gb|DV626741.1|DV626741 97241.1 Cold Sweetening C Solanum tuberosum cDNA clone 97241 5', mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): ATTCTTCAAAACCAACTACTAATTATAATCATCAAGAGGTCATCTATAATAGGGAACTGCTTTCCATCTCTGTTTACACATATGAAGGCATTTTCAATCACATGCACAACCAAATAAATACCTGATTCAAGGTAAGGCAAACTTAAATTTGACACCAAAGCATTCTACATTACTTGTTTTGTTGAGTTGATTCTGAAGGCAAAGAACTTTGAGACTCCAGTAAAATCTCCTGAATCCGTTTCTTCAACAGTTTATCTTTGACACCTGCTAGCATACTACGATAAAACATCTCCAGTCGGACAAGCTTTCCACGATCCAAGGACTCCAACATGTTTTCCCACTCCTTTGCAATGTCAAATGAACCTCCACCACGTAACGAAGCTGGTATATCTCGCTCTTCAAAAGGTTTCCCAAAGGTGGCACCATGAAGAATGCTAGCATACCTTTCCATTAGAGAGAGTTTTGACTGAAGAAGCCTTACATCCTCTGCTGCCATAGACAGTTTCCTCTCCAATTCTACCACATCTTCAGGTTTCTTTTCTGCACCACTTTTATCGTCACCATCTTTCACACTCTGTTCTCTAAAATCTGCATCTAGAGGTGGCCAGAGTGCCATAGTTGGAGAGTAGCAATCAATCATCTTACCATTTCCAAGGACACCACTCCATCCTCTACCCCAAGACCACATCTTATATCCAGCATCTGCCAGAAGAATAGTATGGGCAGCACCACAGACAACTTGAACAGGTTCTGGAAATTAAGCCCATATAGCCCAGCACAGGGAATCAACAGAGGAAGACTTGCATCAACTGCATCAGGTCCACTATAACTTG | |||||||||