| mature miRNA: AAAGTTAGAGAAGTTTGACTT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30935782|gb|CD205579.1|CD205579 HS1_15_F07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_15_F07_A012 3', mRNA AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): AAGCACCTGTAAAAGGCTAAAACCCATGTATTCTCTCCATTCTACCATTCTATACAGTGGTTTGAACAAGTACTCCGCTGTATCACGGTACAGTCATGCCAATATGCCATGATGCTATACACGAACTAGAGCTACAGAATGACCCAAAGGCTTTAAATACACAACATAACATGCATAGTTTGAGAAAAAATATATTAAGAACAATATGAAAATCCAACCATGAATTCTACCATTTAAATCAAGTGGACAACTATTAACCAAACAATAACTAGCACAATTTGCAGAGTAACATTGAACTAAATCTAACATAGTAGACTATAATATGTTAGTATAAATTATTGATAGGATAGGGTAGAATATCATCTATTTTGTACTCCATCCACTCCAAAATGTAGGTCGTTTTGGTTTTATCATAAGTCAAACTTCTCTAACTTTAACCAAGTTTGTAGAAAAATATACTAACATCAGCAATACCAAATAATTGCACTATCAAGAATATTCAAAATAGATTTTACGAAATTCATTTCATTTTGTAGATGTTGCCATGTTGGTGTATTTTCTATAAACTTGGTCAAAGTTGGAGAGAATTTACTTATGACAAAAACTAAAACAACCAACATTTTGGAATTGGGGAGTATAAAAACTTT | |||||||||
gi|30978393|gb|CD234928.1|CD234928 SS1_19_D12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_19_D12_A012 3', mRN AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): GCACACGATTATTTAATCATAAACTGTTTTACATGCATGCTCTTTATTTTATCCCTAAATGCAAGCCAACATATGGCTTCCACTCAGCTCTCACTTTATTCAATCACAAACTGTTTTACATCAAGATATCAGCTTGACCTTGCATTTTCAGTTTGGAAAAGCTTTCAGTCACACTCAGATCTGAGGCCATCTTCCTCTCACTATCTCAGGACTGACTGGAAACAATTAGATCATGCTGATCCTCCCTCGGTGGCAAACTTGTTAAGGAAGGACAGTATTTCCGAATTCACACTCTCGGCCTCTTCTTGCTGGACGAAATGGTGTCCCTCAATGATTGAAACCTCAAGATCTGGAACATTCTCCTTTAAACCGCCACTCTTGACGTACTCCTCAGTTCCAAAGGACTGCAGACCAACGTCGTTCTTGCTGAGTATGAATTTTGCAGGCACTGTGATTTTCGATCCACTCCAAGGTGCAGTGAGTCTCCAGTTTGTTACAGGCATGCGGTAGTAGTTGAGGGGTCCTGTGAAGCCAGTCTTCTCAAACTTTTCGGCAAACTGTCCCAGTTCTTCATCTGTCATCC | |||||||||
gi|57819911|gb|CX621124.1|CX621124 GABR1_56_D11.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_5 AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): GATTATTTAATCATAAACTGTTTTACATGCATGCTCTTTATTTTATCCCTAAATGCAAGCCAACATATGGCTTCCACTCAGCTCTCACTTTATTCAATCACAAACTGTTTTACATCAAGATATCAGCTTGACCTTGCATTTTCAGTTTGGAAAAGCTTTCAGTCACACTCAGATCTGAGGCCATCTTCCTCTCACTATCTCAGGACTGACTGGAAACAATTACATCATGCTGATCCTCCCTCGGTGGCAAACTTGTTAAGGAAGGACAGTATTTCCGAATTCACACTCTCGGCCTCTTCTTGCTGGACGAAATGGTGTCCCTCAATGATTGAAACCTCAAGATCTGGAACATTCTCCTTTAAACCGCCACTCTTGACGTACTCCTCAGTTCCAAAGGACTGCAGACCAACGTCGTTCTTGCTGAGTATGAATTTTGCAGGCACTGTGATTTTCGATCCACTCCAAGGTGCAGTGAGTCTCCAGTTTGTTACAAGCATGCGGTAGTAGTTGAGGGGTCCTGTGAAGCCAGTCTTCTCAAACTTTTCGGCAAACTGTCCCAGTTCTTCATCTGTCATCCAGGGAATTGGCGACGAAGGTGCCTGAAGAAAGTCTATGATCTCTACCCCAGGAGGAGCAAGTATCTCATCGATTTCCATGGCGTAGAACTTCTTTAGGACTGTAGCAACATCATAGCGAGCAAATGCCCTTTCAGTTCTCCCTGGCTCCAGGAACTGAT | |||||||||
gi|30165519|gb|CB929248.1|CB929248 ABA1_41_A04.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_41_A04_A0 AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): TATATATATATAACTGGGTCTACGTACTAAGTACGGAACCGTCCATCTATCTATAAAAAAAGGTATCAGCAGGAAGCGACTAGGTATCTTCCAATTCCAGCTCTCCCGAGTGCAAATGTACTAAAGTCCAGTTCTCTAACTTTTGTCAGTCTGGATAAGGATTCAAACAGCACGCACATGCAAAAAAACACAGCCAGCATATCTACACATCCACAAGGAACGTGGCGGCGTGGGTCATCCTTCATTCACTCACTGATGGATGGCCACATGAATTTCCAGTACACCCCAGCCAGACCTAATTTACAATCTTAATTAATTTTACCTGAAAATGAAATAAAGCAATGCAAAGAGGGAAGGGAAAACTCCAATCAATTTGCTCTGATCCAATCCAATCCGTCCAATAATAATCCTTCAGTCTGTCTGTCGAAGATTTTCTACAGGCGAGAGGTTCTTCAGATCCGTCCCTTCTTCAGCATTTCTACTGCATCCCGATGTGGCTGTTGAGTAGCAGCTGCTGCTGCTGGCTCAAGAACGGATTGCTGCTGCTCAGCAACAGGCTGCTGTACTGATGAAAGC | |||||||||
gi|45952653|gb|CN126978.1|CN126978 RHOH1_20_F12.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_20_F12 AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): CAGGATTTACAGACCAGATGAAGTACTGTGCGTCATTGGGTTAATTAACACACTTTTTTTCCTAATTGTTGAAACATAGTAATGAAAACATTATTAAAAATAGATCACATTCCCAACTAATAATTGAGAAACTATGAAACAAAAGCAGAAGTTGAGTGACGCCAAATTGTACCATCAAAGCTATAGTGCATGTTACATGATCTGACACATTAGCAGGCGAAAGGTAAGCTAGAAGCTGCAACACTTCTCTTAATGAACAAATTCAGCAGATCATGAAGCCTGCAACCCAAAAGGTTCCAAACCAGTGGCTAAGGTACGATCTAGCATTACAGGTATGAACGAAATCAAAGAAAAGCTAGCATCAGTGATTCAAGGAGGAAGCAGGATAACAGAAACCACTTTTGGATGTATCAATGTTTTTGCAATGGCAACTTTGCTAGACCTTGTAACCACTAACCAGTAACCTATATAATTCCTTTGAAGAGAAATATACGTATGAATGCGGCTTTCAACCAAAACGTTGAAGCCATTTGTGTGATAGAGAACGTATCACTTAACCTTGAAATGCCATGCCCAGTAGTCCAGGTACTAGTCAAACATGATACACCACTAGAACTGTAAGCACTTGCATGAACAAGATAAAACTAACTGACCAATATACTCCCTCCATTCCAAAATGTCAGAGGCTTTAATTTTGTCGAGTCAAAATTCTCTAACTTTGAAATATTTATGGAAAGTATATTATCACC | |||||||||
gi|18060234|gb|BM322907.1|BM322907 PIC1_14_H06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): GCACGAGGAGAAAGTGTATTGTATAACAAATGTCAATGCTGCTTTCTCCATCCCTGTTGATATTGAGGCAATCAAAGGTTTTTCCAGCAACTTTAAGAACACAACTACCTTTGTGCTATTGTGAAATGTTTGGGAGGGGATACTGAAAAATTAACTCTTTCCTTGATTTTTTTAAGCACACTGGGCAAAGTCAATCTGAACAATTTGCCCTTAAATGGTACCATAGACCATCAATTCAATGTTTCTTTTTTTTGAAGAAATTCAGATTCATACATTCTTAATTAACTAACTACTCTCTGTTCCAAGTTATAGTTTACTACTTCACTTTAGCTTTGTCCCAAGTCAAACCTCTCTAACTTTTATCAAGTTTATAGAAAAATGCACCAACATCTAGAATATCAAACTAGTTCCATTAAATTCTCCATGAAATATATTTTGATAATGCATTTATTGAACTTGTAGATGATAATATATTATTTTCTAAAAAATTGATCAAAGTTAGATAAGTTTGACTTAGGACAAAGCTAATGTGAACAATAGTTTGAAACGGCGGGAGTACCTTTTATCTTTCTGCAATTTATTTCCAATTA | |||||||||
gi|9852563|gb|BE597490.1|BE597490 PI1_70_B11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence AAAGTTAGAGAAGTTTGACTT EST sequence (targeted fragment marked with yellow): GCACGAGGCAGATATCGACAGGGTACCCATATTTTTAATGAATTTCTTCAGACATTAGAGTATATTTAAAGCCTTGACATGAATTTTGCAGGATGCATACAACAAAGCTGAGGAGTTATTGTTATTGTCCCTAAATGAATGGGCCACGACTTTAGTTGCATCATCTTCACTTCATCCTGTTTGGGTTGAAGTTTTAGGTGATCCACTCCTAAGAAGGCTACTTCTCAGGTGATCTTGTGACTCTTGTCAAATCTTGTCATGAATTGAATCTCTACTCAATCTGTCAAAAGTAGTCCTTTTTGTCTGGAACTATGAATGATTGATTTTGGGCCGCCTTTGTTTTATGAACATCACTATACTGTGCTCGCTTGTAAGAGGTTTCTTGTTACTCCCTCTCCAAAATGTAGATCATTTTAGTTTTCTCCTACTCAGTTAAACTTCTCTAACTTTTGCTAGGTTTATGAAAAGTACACCTACATCTACAAAATCAGTTTAGTAAATCCAACCTGAAGTATGTCTTAATAGTGCACTTATTCNGTATTGTAGATGTTAATGTACTGCTCTATAAACTTGATGAAAGTTAATTTGACTTGGGACAAAACTAAAATGA | |||||||||