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mature miRNA: ACTACTCTCTCCGTCACAATA
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|9302518|gb|BE360961.1|BE360961 DG1_68_B11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence

ACTACTCTCTCCGTCACAATA
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TGAAGAGAGAGGTAGTTTTCT

EST sequence (targeted fragment marked with yellow):
TTTCCTGTCGAATGTTGAAGATACTGACTTTTCATCTTTTGATGGAGAGAGAAGTGACTCAAGTTCAGCCAGGAAAGACCTGTTACTTAATGCTACGACAGAAACTCCAGTTGCACGCCCAAAAGTTGCTTTACCTGCAGAGGCAGATGGCGTTGTCCTTCCCTGGCTGCAATGGGAAACTACCAATGACCTTCAGACCTCACCGTGCAAAACCAAGGCCCAGGGAGAAAGTACCAGATGCAGCACTAGCAATCAGACTACGAGCAGCCGTGGGAGTTGGAGCCCTGGAGACCATGCCACTTCAGTTGCCTCTAAAGATAGATTACTGACCAAGTTCGGTGAAGTTGGGATTTGCCGAAGCATCTGCCCTGATTATGTTCGAACCTTGTCGTCGTTTCACATTGACGACTATTTGCATTTGAGACAGAGTGAGGATCTCCTCTTGGAGACGTGGAGGCAGAAACACAGAATCGACTCTGGCGGCCTAGCCCTGTGCAGTAAATCGACAATATTGTAGAGTACAGCCAAATAGGTAGTTGATGGAGTTGAGTTAGAATAAATGCTTAGATTTTTACCTTTGGCTGCGATGGCTCGTGCCGCCTGGCGTGTATAGATGCATGCATTGTGGTTAACAATT