| mature miRNA: CATGGTGGTGACGGGTGACGG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34446207|gb|CF433506.1|CF433506 NIT1_27_E04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_27_E04_A002 CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): CTCCGCGTCGAGCGAGATTGCCCCTTCCGCCGTCGCCACCATGGATGCCCTCCTCTGTCCTCGCCTCCATTGCGTACCAGCACCTCAGCCTCCGCACAGTGAATCCCGCATGGGCGCATCTCCCTGCCTCCTCTAGGGTTTCTTCTCTCTTTGTTCCTCTCACTAATCCTTGTAGATCTTGGGGAAGAAGATCCGAGGCCGCCCAGGATCCCCGGCGAGACAACGACGGCGAGACTAGTTCTCTCTGCAACCACACGTCCACAGCTCTATGTCTCAGCCGGCCGCGGAACGTCCGCCCCTTGTACAGCCTTACTTGGCCTGTCAGTTGGTAAAGGAACGAAAATTAGCAGTAGGTTATGCCTCTCTCTTCTCTATGTGCAAGATGGCAATAGTAGAAGAATTCAGACTTGAGATTATGTTCTAGAAATGTGAACAAATGATCTAGATGCTTTGGTGCAGCAGGTATTTTGATCAGTCAAATCAAATGAAAAATCATGTTCATTTGCTTAATTCAATAGTCCACTAGAAGTTCTGTGATTTTGTGTCAAGCTGCTTCTTGAACCTGAAGTATTTGCACATTATCTATGGACCATAATGGTTCCATTTTTACAATTTTCTAAAATGCCAACTAATTTTTCATTCTAATAAAAATCACTTCAATTTCTCACGGTTTAACTATAATGAAACTGTATGCAGTCCTAAGCTAGTTTAG | |||||||||
gi|14089166|gb|BG739477.1|BG739477 EM1_81_D07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): GCACGAGGCCACCCCTAAACCCAGAACCCAGCCCGCCGCAACCCTAGCCGCCACAGCGCGCCGCCGGCACCACACCACCGTCGCCGTCACCTCCATGGCCGCGCCGTCGGAGGACGCGCTGCGGCGCGCGCTCGCGGAGCGCCAGGCCGCCGCGGACGCGCAGGCCGAGGCCGTGCGCGCGCTCAAGGCCGGCGGCGGCGCGTCCAAGGCCGACGTGGACGCCGCGGTCGAGGCGCTCAAGGCGCTCAAGGTCGAGGCCGGAGCCGCCGCGCGCCGGCTGCAGCAGGCGCTCGGGGCCGGCGCGGGTGGCGCCGCGAGGGAGGAGCTGCGGCAGGCGGTGGTGAACACGCTCGAGCGGAAGCTGTTCTACATACCCTCCTTCAAGATCTACCGCGGTGTCGCGGGGCTCTATGATTATGGCCCGCCCGGGTGCCGCGTCAAGGCCAACGTGCTTTCCTTCTGGCGCCAGCACTTCGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACGCCTGAGGTT | |||||||||
gi|18053121|gb|BM318779.1|BM318779 PI1_16_H11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): TCGACTCGGTGTCGCTCTTCATCTCGCTGGCCGTGGTGGTGGTGCAGACGTCGGTGGTGGTGATCGAGCGCAAGGCCAAGAAGCAGATGATGGCGGTGATCAACAAGCTCATGTGGGTGGCCTGCGTGCTCATCAGCGTCTCCTTCCTGGCGCTGTCGTTCGTGGTGGTGGGCCGCGCCGAGCGGTGGCTGGCCGTGTCCGTCACCATCATGGGCACCACCATCCTGGCCACCACCATCGGCACCATGCTCTACTGGGTGATCGCGCACCGCATGGAGGCCAAGCGGATTCGCACCAACAAGCGCAACAGGCTCAGCCGCTCCCGCTCCTTGTCCATCTCCGGCATGTCGGAGGGCGAGTGGGTCGAGGAGGAGTACAAGAGGATGTACGCCATCTGACATTCTGACTCTGACCATCCCACCCACGCTAGCTACCTGCATGCTTAATTTCATCTCGTGCATTTCAATTGCATGAGCATCGATCGCATTGCCACAAGTACGTTGCCGTGCTTCGGCCCGGGCTAACATTTTCTTC | |||||||||
gi|57806095|gb|CX607502.1|CX607502 ANR1_29_C08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_29_C08_A002 3', mRNA sequ CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): GAACCCCAAAGTAATCCCATTTCATTTCTCCATTGATCATCATGTTTATAAGTAGCAGTTATGCAGCTAATACATCGACGACAGAGAACCAAGAGAACGGTAAACGTAAACATAACAGAGTCAAAAAAACATTCTCTAGCCCGTCTAGTCCAAAAGTATGGTATATGCCCCCATATGCCTGTATCCTTCACCACTACTTACTACTTACCACATCACTCCATAAACACCAAGCTGTAAGCTATCGACGACTATGTCCCACTAAACCTGCACCTAAAGAACAAAATGATCTCACCAGTCACCAGTCACCACCATACCATGATCACCGATATATCTACGCCATCTCCAGTTTAACACAACACTACCTACATCTCCACCTGGCAAAAACACCAGGCAGCTTTTGGATCAAAGGGACAAACACTATGTTGGTGTCGGATTCAGCTCAATGCCACGCTGCCTCGCATTCTCCACGATGCTCTCAGTGTTGCTCCCACTGGCTTTGCAGTAATTCAGATGCGCGTGCCACAGCTTGAAGGAAAAGGGGTAAACCGATGCTGCCTGCTGGTAGAACCTCTTTACAATCTCTGTGACATGCAACTTCTGCAGGAGATCTGCGCCTTCTAGCCATACTGATTCTGGTGCGACAGGTACAGCTCGGA | |||||||||
gi|31331581|gb|CD425318.1|CD425318 SA1_11_C04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_11_C04_A00 CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): ATTCATTTCATTCATCATCCGCGACAACGGGAAAAACCAGCCCATATTGACAACGACGAGACGACCAGACGCTGTCTCTTTCAGCCACGCCTCGTCGCGGAGACGATTTCTCGCCTCGGCCTTTCGCTAATTAACTTTACTTCTTTCTTTATTATCGCCTTACTCCGTTCCTAATTCTACGCCAATTGCCGCGGCCTCACTCTCGCTCTCCATCTATCCAAAGTCAGTCCGGAAGAAATTCACGTCTTTGGAAGACCGTAATCCGTCACCACCATTTCCGATACTTTGTCAACCACCTCTGTCGTGGGCTTTGTTTTGACTCATACTAGTAATCTTGGACTATTGGAAGGATTGGAAGTGCACTGTCAACAACCCTGGACCTGTAACGACGACAACCAACTCTTGACCGAACGAAACGACTCGATCGACAAGGAACCTGAACACCACTGGGATACGTGGTCACGATGTGGTCTTGTATCATGAAACCACTGGCGGTTCTCGCCTCAGTGGCTGCCCTGGCCTCACCCGTCTCTGGAGAGAAGATTCTCTACTCCAACTCGCTCAACAGTTGCCAGAAGGATAACGGTTTCAAGGCTACGCTCTTCAACGTCGCACTGACAC | |||||||||
gi|45992947|gb|CN150545.1|CN150545 WOUND1_69_H04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_69_H04_A002 5', mRNA s CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): CATCGCGCATCTATCTCCTCGCCGACTCCGCGTCGAGCGAGATTGCCCCTTCCGCCGTCGCCACCATGGATGCCCTCCTCTGTCCTCGCCTCCATTGCGTACCAGCACCTCAGCCTCCGCACAGTGAATCCCGCATGGGCGCATCTCCCTGCCTCCTCTAGGGTTTCTTCTCTCTTTGTTCCTCTCACTAATCCTTGTAGATCTTGGGGAAGAAGATCCGAGGCCGCCCAGGATCCCCGGCGAGACAACGACGGCGAGACTAGTTCTCTCTGCAACCACACGTCCACAGCTCTATGTCTCAGCCGGCCGCGGAACGTCCGCCCCTTGTACAGCCTTACTTGGCCTGTCAGTTGGTAAAGGAACGAAAATTAGCAGTAGGTTATGCCTCTCTCTTCTCTATGTGCAAGATGGCAATAGTAGAAGAATTCAGACTTGAGATTATGTTCTAGAAATGTGAACAAATGATCTAGATGCTTTGGTGCAGCAGGTATTTTGATCAGTCAAATCAAATGAAAAATCATGTTCATTTGCTTAATTCAATAGTCCACTAGAAGTTCTGTGATTTTGTGTCAAGCTGCTTCTTGAACCTGAAGTGTTTGCACATTATCTATGGACCATAATGGTTCCATTTTTACAATTTTCTAAAATGCCAACTAATTTTTCATTCTAATAAAAATCACTTCAATTTCTCACGGTTTAACTATAATGAAACTGTATGCAGTCCTAAGCTAGTTTAGATGTGTGTTTGTTGATCTATGCATCTGTTCATCTATTTTCTAAGTGTGTTGA | |||||||||
gi|34444587|gb|CF431886.1|CF431886 NIT1_11_C08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_11_C08_A002 CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): ATAACCAAGAGAGTGTACTTTTTTAGAGGAAATAACCAAGTACTTTACTTACAAGTTACAACATATATATCCTCTCAATGATCAGTTGGCGCACGGTTGTATAATAATATAAAGTGATTTCCAAACTAGCTACAAATTGTGGAATGAATGAATGAAGCATTGTATATAGATTCTTAGTAGTCGAAATTCTGGTAGGTGGTGTAAGTTTGTCCGAACTGCCACCACGCCGGCACGACGTCCTTGAAGACGAGGTTCTGGCCGCCGGTGGAGACGAGCGCGAAGCTAAGGCCCTGTCCGACGAGCCCGCCGGAGAGGCAGTGCCAGTTGGCGCCCCAGTTCCTGTACATGGGGATCCAATCCGTGCTGTTGCCCTTCACCGCCATGCTCTGAATGGAGCCGCTGCCGGCGACGTTGGTGATGAGCACCATGTAGAAGCCGTTGAAGCCGGCGATGGTGAAGCGCACGCCGCCGCTCTCCCAACACTTGACTCGCTGG | |||||||||
gi|30977116|gb|CD233651.1|CD233651 SS1_3_G10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_3_G10_A012 5', mRNA CATGGTGGTGACGGGTGACGG EST sequence (targeted fragment marked with yellow): ACTCCCTGCGGCCACTGCTCCTCGCCTTAACCCGTCGCCGCCATGACTCCCGCATCCACCTTCCCTCTCGCCGCCGCCGTCCTACCCACGAACTTATCTTCCTTCTCTCGCTGCCCCCCTCGCCGCCTCCCGCGCGTCTCCTGCCTGGCGGCGCCCGAACGCCGCGGGGGCGGCAATGCATCGAACGCCTCGCGGGCGCCGCAGCAGCAGCCGGGGTGGCGCGCCGCGGTATCCGCCGTGCTCGCGGCGGCCGTGGTCGCCGCCTCGATGCCAGCTTACGCGGACCTGAACAAGTTTGAAGCCGAGCAGCGGGGCGAGTTTGGCATTGGCTCCGCCGCGCAGTTCGGCTCGGCCGATCTCAAGAAGGCTGTCCACGTTAACGAGAACTTCAGGCGAGCCAACTTCACATCCGCTGATATGAGAGAGTCGGATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAAGGCAAATTTCACTGGTGCCGATTTGAGTGATACATTAATGGACCGCATGGTTCTAAATGAAGCTAACCTTACAAACGCTGTTCTTGTACGGTCAGTCCTAACACGTAGTGATCTTGGAGGAGCGATCATTGAAGGTGCTGACTTCAGTGATGCTGTTATTGACCTACCAC | |||||||||