miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCCGCCTTGCACCAAGTGAAT
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|45985473|gb|CN145907.1|CN145907 WOUND1_36_C12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_36_C12_A002 3', mRNA s

CCCGCCTTGCACCAAGTGAAT
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GGGCGGAACGTGGTTCACTTA

EST sequence (targeted fragment marked with yellow):
GGCGACACAGAATCATTACAGCAATCCGCACGATCCTTATCAGAAAAATTAAAAAAAAACACGCAGCAAGCAGGCTACGGCATCGCAATCAAGAGCAGAGCAGAGCAGCGCAGGCGGCGGCGGTCGGTCGGTCGGCTGCTCCGGCTCGGATTCACTTGGTGCAAGGCGGGATCTGTCCCGTCCGAGCACGGCGGCAGGTCCCGATCTGCACCAAGCGAGCCCGAGGCGGCGCGGCGGCTTGGGGCGCTTGACATCTTCCCTTCCTCGCCCTGCTCGGTCGCTCGTGTGGCGTGGATTGGATGCAGGGAGGAG