| mature miRNA: TCGGACCAGGCTTCATTCC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9302433|gb|BE360876.1|BE360876 DG1_67_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TCCTTCAGCGTCGGCAAGGTCCAGCGGTTCGCGCTGGGGGAAGGGCTGGACGGGTCGGGCGTGGAGACCAGCTTCCTCAACTGCAACTCCTCCGTCGACATGGTGATCGACAACTACTCCAAGGTCTTCACGCTGCGCGTCGCCCCGCCGCAGCTCGACATGTCCTTCGGCCGATTCGTCTTCGCCATCTCACAGGGAGACGGCTGGTCACACGACGTCGGGCCACGCGGCACTTCGACGGTGAGGCTCTTCGTGGCGGCGCAGGACAAGCCCATGTACGCGGCGGGACGCGGCATGCAGGACCTGCTGGACTCCAGCCACGGCCTGCCACTCACCATCACGGTCAAAGCGCGGTCCCGGTACCGAGTGGTGGGGAGCCTGGTCCGGCTGACGTACCGCCACGACTCCCAGTGCGTCGTGCTCCTCAGAAGGACGCCCAGCAGGAGCAACGGCATTAGCGTCGCTGCCGGCAAGGCCACGACCACCTGCTCTGCCTTAAGCTAGAGTGCCCGAAAGACGCCGGTGTCTCTTCTGCGGTTCTGCCGATGTATCCGGAATTTTTAGACGTGCCTNTTTTACACGGGGTGGGCTTAATACAGAAGGCTA | |||||||||
gi|57818934|gb|CX620147.1|CX620147 GABR1_50_D05.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_5 TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): ATTCCACAATTTATTCAAAGCTTTCAGCCATTTACATTATTTGATGTTGTACAATGATGCAAATTTAACCAACTTATCCTGTGATTCGTGATAAGAGTGCCTGTCTTATCACCAATGGGGTAGATGTTGTAAATTCAGTAGACTAACTGTAATGCCACAGAAAAAGGATGCACACCTGTTCGTCACTATGAAAATGAAACAGAATTGCAACTAATATTTTTGTCGACCACTGCAACAGCTACAAGAGGGAGGAAGCCTGGTTCGTCTCTTTAATAGCCTCTTGGACAGCCTTCAGGAGCGATGGCATCAAGTTCTTGTTCGTTGCTATGATGCCTGTGTCGAGATCGAAAAATCTCCCTTTGGAGAAATCCAAGTCATTTCCGGCGGCATCTGTTACTATGCCTCCAGCTTCTGTCACGACAATTGAGCCTGCTGCATGGTCCCATATTTTCTCTCTATAACCTTTGTGCGGAAAGCGCAAGTAAATGGCACCATCGCCTCGGGCCAGAGCACCATATTTTGCTTGGCTGTCAATTCTAACTGGAGG | |||||||||
gi|30973106|gb|CD229672.1|CD229672 CCC1_18_D06.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_18_D06_A00 TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TACTGGGTGGTGCAGCCAGCTGAGCTACAGGTGCCGGCCAAACTTCCCCAACTGAATGTCTTGCAGGTGACTGAGGAGGCTGAGCTGCAACGCCTCTTCAGAGCCCATGCCATGGCCCTCCAAGGAGCTGTGCAGCGCATCGTGGACCGTGCGGGTGGAGAGACGGCCTCCCTGCTGAAGTCACTCATGTACGACTACATCGACAAAGCCTCTGCGCTAGCTGGCGGGCTCGGGCTGATCCAAGCCCCGCCGGAAGCTGCTACGCCGGGAAATGAAGCCTGGTCCAAGTGGCCACCCCAGCCAGCTCCGACACACCAAGCTACTCACGCCACGGTACCCGTGCGTGACGTCTTCGGCCGCATCCTCAGCACGCTACCACCGAAGGCAACAGTGGAAGACAACTCCATTGCTGCGGTCGAGAAAGCACTGGCGCGCATCGAGCTCTCTGCAAGGGAGAGCCCCACAATTCAGGGTGACAGCAGCGGTGGCCAGCAGCTAACCAGCAGTGTCGTAGCACTCTTCAGCAAGCCGACGGAGCCGCTGCTCCAACAACCTCAGCACGCAGCTGCTGTCGTGCCAACAC | |||||||||
gi|45975730|gb|CN140010.1|CN140010 OX1_33_B02.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_33_B0 TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CCACGCGAGCACACCCACCACCTACTCCTACTCCCCATGGCAGGAGCGCGCACGGGAGCCGGCTGCTGCTCCACCTCCTCTCCTCTCCTGCTGCACTACTAGGCGGTGCCCGCCGGCGACGACGATGGCGATGGTCGCGAGCAGGGAGAGGCGGCTCTCCCCGCCGGGCGGCGCCGCCCAGGGCGCGCCGCAGGTGGACGCGGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGCGCGTCTACAGCGAGTGCCCCAAGCCCAGCTCGCTCCGCCGGCAGCAGCTCATCCGCGACTGCCCCATCCTCAGCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACCGCAGATGCCGGGAGAAGCAGCGCAAGGAGTCTTCTCGTCTACAAACCGTGAACCGGAAGCTGAGCGCGATGAATAAGCTGCTGATGGAGGAGAATGACCGGCTGCAGAAGCAGGTGTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTCACCACAACCAACAGCAAAACCCAGCAGTTCTGCATCCTCCACAAAGGGATGCGAACAACCCAGCAGGTCTACTCGCTATTGCTGAGGAGACATTGGCAGAGTTCATGTCCAAGGCGACTGGAACTGCTGTCAACTGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTC | |||||||||