miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCGGACCAGGCTTCATTCC
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|9302433|gb|BE360876.1|BE360876 DG1_67_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence

TCGGACCAGGCTTCATTCC
.|||||||||||.| . ||
GGCCTGGTCCGAGGGGTGG

EST sequence (targeted fragment marked with yellow):
TCCTTCAGCGTCGGCAAGGTCCAGCGGTTCGCGCTGGGGGAAGGGCTGGACGGGTCGGGCGTGGAGACCAGCTTCCTCAACTGCAACTCCTCCGTCGACATGGTGATCGACAACTACTCCAAGGTCTTCACGCTGCGCGTCGCCCCGCCGCAGCTCGACATGTCCTTCGGCCGATTCGTCTTCGCCATCTCACAGGGAGACGGCTGGTCACACGACGTCGGGCCACGCGGCACTTCGACGGTGAGGCTCTTCGTGGCGGCGCAGGACAAGCCCATGTACGCGGCGGGACGCGGCATGCAGGACCTGCTGGACTCCAGCCACGGCCTGCCACTCACCATCACGGTCAAAGCGCGGTCCCGGTACCGAGTGGTGGGGAGCCTGGTCCGGCTGACGTACCGCCACGACTCCCAGTGCGTCGTGCTCCTCAGAAGGACGCCCAGCAGGAGCAACGGCATTAGCGTCGCTGCCGGCAAGGCCACGACCACCTGCTCTGCCTTAAGCTAGAGTGCCCGAAAGACGCCGGTGTCTCTTCTGCGGTTCTGCCGATGTATCCGGAATTTTTAGACGTGCCTNTTTTACACGGGGTGGGCTTAATACAGAAGGCTA



gi|57818934|gb|CX620147.1|CX620147 GABR1_50_D05.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_5

TCGGACCAGGCTTCATTCC
||.|||||||||| |.||
TGCTTGGTCCGAAGGAGGG

EST sequence (targeted fragment marked with yellow):
ATTCCACAATTTATTCAAAGCTTTCAGCCATTTACATTATTTGATGTTGTACAATGATGCAAATTTAACCAACTTATCCTGTGATTCGTGATAAGAGTGCCTGTCTTATCACCAATGGGGTAGATGTTGTAAATTCAGTAGACTAACTGTAATGCCACAGAAAAAGGATGCACACCTGTTCGTCACTATGAAAATGAAACAGAATTGCAACTAATATTTTTGTCGACCACTGCAACAGCTACAAGAGGGAGGAAGCCTGGTTCGTCTCTTTAATAGCCTCTTGGACAGCCTTCAGGAGCGATGGCATCAAGTTCTTGTTCGTTGCTATGATGCCTGTGTCGAGATCGAAAAATCTCCCTTTGGAGAAATCCAAGTCATTTCCGGCGGCATCTGTTACTATGCCTCCAGCTTCTGTCACGACAATTGAGCCTGCTGCATGGTCCCATATTTTCTCTCTATAACCTTTGTGCGGAAAGCGCAAGTAAATGGCACCATCGCCTCGGGCCAGAGCACCATATTTTGCTTGGCTGTCAATTCTAACTGGAGG



gi|30973106|gb|CD229672.1|CD229672 CCC1_18_D06.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_18_D06_A00

TCGGACCAGGCTTCATTCC
| ||||||||||||||| |
AACCTGGTCCGAAGTAAAG

EST sequence (targeted fragment marked with yellow):
TACTGGGTGGTGCAGCCAGCTGAGCTACAGGTGCCGGCCAAACTTCCCCAACTGAATGTCTTGCAGGTGACTGAGGAGGCTGAGCTGCAACGCCTCTTCAGAGCCCATGCCATGGCCCTCCAAGGAGCTGTGCAGCGCATCGTGGACCGTGCGGGTGGAGAGACGGCCTCCCTGCTGAAGTCACTCATGTACGACTACATCGACAAAGCCTCTGCGCTAGCTGGCGGGCTCGGGCTGATCCAAGCCCCGCCGGAAGCTGCTACGCCGGGAAATGAAGCCTGGTCCAAGTGGCCACCCCAGCCAGCTCCGACACACCAAGCTACTCACGCCACGGTACCCGTGCGTGACGTCTTCGGCCGCATCCTCAGCACGCTACCACCGAAGGCAACAGTGGAAGACAACTCCATTGCTGCGGTCGAGAAAGCACTGGCGCGCATCGAGCTCTCTGCAAGGGAGAGCCCCACAATTCAGGGTGACAGCAGCGGTGGCCAGCAGCTAACCAGCAGTGTCGTAGCACTCTTCAGCAAGCCGACGGAGCCGCTGCTCCAACAACCTCAGCACGCAGCTGCTGTCGTGCCAACAC



gi|45975730|gb|CN140010.1|CN140010 OX1_33_B02.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_33_B0

TCGGACCAGGCTTCATTCC
.|||||||||||||||.||
GGCCTGGTCCGAAGTAGGG

EST sequence (targeted fragment marked with yellow):
CCACGCGAGCACACCCACCACCTACTCCTACTCCCCATGGCAGGAGCGCGCACGGGAGCCGGCTGCTGCTCCACCTCCTCTCCTCTCCTGCTGCACTACTAGGCGGTGCCCGCCGGCGACGACGATGGCGATGGTCGCGAGCAGGGAGAGGCGGCTCTCCCCGCCGGGCGGCGCCGCCCAGGGCGCGCCGCAGGTGGACGCGGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCGCTGGAGCGCGTCTACAGCGAGTGCCCCAAGCCCAGCTCGCTCCGCCGGCAGCAGCTCATCCGCGACTGCCCCATCCTCAGCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACCGCAGATGCCGGGAGAAGCAGCGCAAGGAGTCTTCTCGTCTACAAACCGTGAACCGGAAGCTGAGCGCGATGAATAAGCTGCTGATGGAGGAGAATGACCGGCTGCAGAAGCAGGTGTCCCGTCTCGTCTTTGACAACGGGTATATGAAGAATCGACTCCACAGTCCTTCTGTAGCCACCACCGACACAAGCTGTGAGTCTGTGGTGACAAGTGGTCACCACAACCAACAGCAAAACCCAGCAGTTCTGCATCCTCCACAAAGGGATGCGAACAACCCAGCAGGTCTACTCGCTATTGCTGAGGAGACATTGGCAGAGTTCATGTCCAAGGCGACTGGAACTGCTGTCAACTGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTC