| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57807880|gb|CX609160.1|CX609160 ANR1_11_B10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_11_B10_A002 3', mRNA sequ TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): ACAATCACTTATATCTTTTTTGAAATAGATTATGCTGGCAGCTTGATTTTATAAGAAAACCATAGATGATAGCGATGGGCAATACATATAGTCAATCATGAACAACCTTCAGTATCTTTTTCACTTCACGCAAACACACATTCGCTGACAACCTTGCAGTCACTGAAAATTATCTGAGCACCGGAGGAGAACCAGTCTCTGAGCTTATTCACTACCAGCTCTTGTTCATCTTCATTTTCTAGAAATTTATGTTTTACTAACGCTGTACTGGTTGATTCGCATTCCTTACAGCACTTGTCTTTCAAAACAACCGACTGTAAGTTAGGAGCCCGGTCCATCACTGCTCCTATAAACAATAGATGTTCTTCTGATGCATTGAAACCAATGATTTCAAGTTCTTTCAGTGGCAAATGCTTCGGGTATGGAAACTCTGGCACTTCCCATGACGCATTACTTCTTTTAGCACACAACTTAGTTACTTTCTCGTCCTGCTCACATCGATGGTCATACACCTCAACTTCAAGTATCTCGAGGGATGGCGCAACTTCAAGAAGATTTGTTGTCCACAAAAGCCCAAATCCAACAAAGATATCATATATGCACAATTTCCTCAAATTGCTAAATGCTGAGGAAAGTTGATGTTTTTCAGGTAGTAGCCAAATCTTTTGCCCGAGGAAATCCAATGATAAAGTATTTATACATGCCGCGCCACATAGAAACTCACTTAACTTAAATTGTTCTTGATGAGGTGGCATGGCTGAAA | |||||||||
gi|30978275|gb|CD234810.1|CD234810 SS1_18_D11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_18_D11_A012 3', mRN TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TTATTATGTATACCGCATAACGAAAAAAAGGAATAGTTATCAACAGAATAATTTCTATAGCATGCACTGTCTCCCCGGTGTATCAATTGGCGCTGACAAGGAAGGGATGCTGGCACACTCCACACTCCACTGTCTCTGAGCCAGATGTTGGAACCTGAACCTGAAGATGAACTGTGCAGGTAGGGCACGCGACTTCCCTCATTCTGGTACCAGATGAACCACCACCAGATGCTGGACCTGAAGACTTGCGGTTTTTCTCCATTTCCTCCTTCAGTTTTCTTGCAAGATCTTCATGACTTTGCACAGTTGCAGATCTGTTGGCAGCTTCCTTAGCAATGCTAAGCCTTTGAGTGACATCGGCCATGCATCTATCACAAACTCTGACAAGTGGAGCATTATCCTCAGCTGTCAGAGCAATTCTTCCCTGACTGCATTTGTCACAAAAGATTCCACCACAGTTCCGACAATGATGCCTGCGATTGAAAGGGCTAAAATCAACGGCGCACGAGTGACACTTCTTGGCAACCTCATCTGGGACCCAATGGTCTTTCACTTCATCAACAGGTTTTGTAAACATCCAATCAAAACCTTTCTTTTTCTCATTTGATTGTACTGAAGGCTTGCCAGTTCCCACTGCTCCTTTGCTTCTTGCATCTCCACCTATCTCCTTAAACTGCACTGTTGCTGCT | |||||||||
gi|30940904|gb|CD208122.1|CD208122 HS1_31_A11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_31_A11_A012 3', mRNA TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GTTCAGTTTGATTCCGCTCCGAACAAAGGAGGCAACAATTCTGGAAATTCTGACAGGCTACAACCTAAATTATTTCAGTTCCACGCTGTATTGTACATAGTTCATCGCGTGGAACTAGAACTTCCTGTGGTGAGGACGACTGCGTGTTCGGAGGGCACACACTTGTGCTTATTCCTGGAGCTATGGACATGGCACCATCTATAGAGCAGACTGGAACAGAATCTCCGCCAGTTCCTGCTTGCCGGATGGAACGGTGGGCTCACCCCACTCTAGAACCTTCTTTTCTAGCGTCTCAAAGTCTCCTTTCCCAGCCTCAATCAAGGCGCCAATCTCACTGTCAAAGCTCTGGTACCTCTTTCGGACAAGATCATCTAGGGAACCATCCTCAATCAGCTTGGCAACGTTGCGGAGGCCACGAGCCAGGGTGTCCATTCCAGAGATATGAGCAAGAAACATGTCCTCAACATCAGTACTTTCCCTCCGCAATTTTGCATCAAAGTTGAAACCACCAGGTGCAAGTCCACCATTCTTAACTACACTCGACATAACTAAGGTAGCCTCTGCAATGTCTGTCATGAACTGATCTGTGTCCCAACCAACTTGAGGATCACCAGTGTTTGCATCAATATTTCCAAGCAACCCATTAATCCGTGCAGTCTCCAGTTCATGATGGCAGCTGCAAGTTTAACATGCAGT | |||||||||
gi|30964600|gb|CD221166.1|CD221166 CCC1_74_D10.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_74_D10_A00 TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): AAAGAAGCAGCATGATAGAACTTCGAACAGGCATAATGCGGACGTCACACGCGTGCATGAGCACAACCTTCACTCTTCAGGCTCCACCGGTTATAATCTAATGGTATTCTCTGCATACATCCAGCATTGCAATACTCCCGAATTGGAATTCACCCATGTACAGGGGAAAAAGAGACATCCTAACCGTGATCACCAACACAATCAAAGAAACATGTACAGGCTGACACAACACACACTTATTATGTATACAGCATAACAAAAAAAAAGGAATAGTTATCAACAGAATAGTTTCTATAGCATGGACTGTCTCCCCGGTGTATCAATTGGCGCTGACAAGGAAGGCATGCTGGCACACTCCACACTCCACTGTCTCTGAGCCAGATGTTGGAACCTGAACCTGAAGATGGACTGTGCAGGTAGGGCACGCGACTTCCCTCATTCTGGTACCAGATGAACCACCACCAGATGCTGGACCTGAAGACTTGCGGTTTTTCTCCATTTCCTCCTTCAGTTTTCTTGCAAGATCTTCATGACTTTGCACAGTTGCAGATCTGTTGGCAGCTTCCTTAGCAATGCTAAGCCTTTGAGTGACCTCGGCCATGCATCTATCACAAACTCTGACAAGTGGAGCATTATCCT | |||||||||