| mature miRNA: TGCAGTGGCATATGCAAGTCT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30947812|gb|CD211579.1|CD211579 HS1_63_D10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_63_D10_A012 3', mRNA TGCAGTGGCATATGCAAGTCT EST sequence (targeted fragment marked with yellow): CCGACATCCGTCCACGGCCCACATGTTACAACATGGTACACTCTCATGAGCGACAGAATGTGTGATTGCAACTCGCAAAAGAATGTCAAAATTTGCATAAAACAATGTCCTCTACATTACATGATCTCTGCTTCCATACGCATCAGCTGAGAAACTCTCCCCCTACTTGTAAGATCAGTAACATCAGTTGCAACCCTACTTTGGAGTTCCTAACAGTGACAGACCAAAATTACGTGTTGTTGCAGAATTTTTCCAACCCGAAGTTACCATTGGCAACGTCCTGTTTTCTGCAGTTTCAGATCATAATCCACGGGGCATCATCTTTGGGTTTTGTCAAGTTTACTTCAGGAGTTGCCTATGCAGGTGTCCACCACGATAGCTTACCAAGTATGCTACATATTTACGGGCAAAGGAGGGTATGCGCTAGATAAGAGCACTCCAAACTGCTGAATCCCCTTCACCACAGCGAGCATGTACATCTTTGATCCTCTCAACAGACTTGCATATGCCACTGCAGCTCCAATCGAAAGATGCTACACAGACATTGCCAGCTTGCCCTTTCCACTCACAATCTGGTGGAGTTCCACAGCACATGTTCCTTTCATCAATGTGATTAACTTCCAAGCCAATGAACCATGATCCAAGCGACACGTCTTCATTTGCATATTTGTGC | |||||||||
gi|30939890|gb|CD207635.1|CD207635 HS1_33_A12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_33_A12_A012 5', mRNA TGCAGTGGCATATGCAAGTCT EST sequence (targeted fragment marked with yellow): ACTGGCTTGATCACCCAATCCGGCTACTCCCTTTGTCTCAGGAAAAAGAAATCGAGGCAATTCCCCACTTCTCACACGACCTCCCGATTAAACGCTAAATCGCGCCAAATTTACTCTTGGTCTCCCCCAAACCAGCCGCCGTCTTTCATCCTGCTGTTGCAATTTCATCCAAAACTTATCCCCGTCGGAACTGGGAAGCCATCGCCATGGCCGCGGAGGCGGGCAGCCGGCGTGGGGCGGCAGCGCGGAGGGAGGCGCAGGAGGCGGCTGTGGGCGCCACCGCGAGGGTTCTTTTCTACCCGACGCTGCTGTACAACGTTGTGCGGAGCAAGGTCCAGGCCGAGTTCCGGTGGTGGGACGAGGTCGATCAGGTCGTTTTGCTTGGAGCAGTTCCATTCCGCAGAGATGTAACACGCTTGCAGAAGCTTGGGGTACATGGCGTGATAACCCTAAATGAACCATTTGAGACTTTGGTACCATCATCTATGTATAAGGCAAGTGGCTTGTAAGTTATTTTCCCTTTTCATGGTAAAAGGTTTATGTCATTTTGTAGATCCTTAATCCTTCAAAGTTTCATTAAACCTTGCATATGCCACTGGGAACATAACTGCTGACCCAATCTATTTCCAATCAGAAATACACTGTGACATAAATGCTCCTCTGCTGAAATTTACAGTCACGTGGGATTGATCACCTTGGTATTCCTAC | |||||||||
gi|31376499|gb|CD461482.1|CD461482 SA1_22_C08.b2_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_22_C08_A00 TGCAGTGGCATATGCAAGTCT EST sequence (targeted fragment marked with yellow): TTATTGTGTTATTTTGAAATCAACCAGTAACATCGATGAGGACCTTTCAAAGAATGGTGGGGGGAGATGCCCTGTCTCCCTCTCCTTTCACTCTCTTCCTCATCATGATCCTCTCCTAGCTTCTCTTTATGAGTAAAAACCTGGGATCTTTTCGAACACCAAAAAAGAAAAGCCCCCTTACAATAATCCAATTCCTAAGCCAAAACACCCAAAAACAAAAACACCCCCTCCTCTCTACCATAATGCATGTACACTTGAGTGTACATTATCGCGCTCTCAATCTCATGCTCTTCAGTCTGGTTCTGCACTTGCAAACCTGAGTGAATCACCATATGCCTTCTGTGCCACACACTGTTGAGCCATGTTTTCTTTGTATACGTACGTATGTATGTGTTTTCCATGTATTATCTGGGCTGGGCGATCTTGGGTTTAAAACTTTGCATTCCAAATCGCATTCTCACTCTCACCGCAACGCTGATGGACTTCCTTGATCCGATCAGCAGATTTGCAGATGCCACTGCAGCTCCAGTCGAACGACGCAGCGCAGACGTTCCCCGCCTGCGCCTTCCATTCGCAATCTGGTGTAGTGCCGC | |||||||||
gi|45975857|gb|CN140064.1|CN140064 OX1_33_G07.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_33_G0 TGCAGTGGCATATGCAAGTCT EST sequence (targeted fragment marked with yellow): GTTACCTATATGCCTTTTCTATCCAGGGACTGAAGCATTGTATACTGATCTATGTCACTTCCCTGTACTGGCTATTCAGATTGCGTTCACCTTAGTGGTGTTCCCTTGCCTTCTACTGGCGTACACTGGGCAGGCTGCCTACATTATTGACCACAAGGATCATGTAGTTGATGCCTTCTACCGCTCCATTCCAGAGGCAATATACTGGCCAGCCTTCATCATAGCAACTCTTGCGGCAGTAGTTGCAAGTCAAGCAACCATATCTGCCACCTACTCAATAATTAAGCAAGCTCTTGCACTGGGCTGTTTCCCCCGTGTCAATGTTGTGCATACCTCAAAGAAATTTCTGGGGCAGATTTACATCCCTGACATCAATTGGGTACTTATGATTCTTTGCATTGCTGTAACTGCTGGATTCAAGAATCAAAGCCAGATAGGAAATGCATATGGCACTGCAGTGGTGATTGTTATGCTAGTTACAACATTTCTCATGATCCCAGTGATGCTGCTGGTATGGAAGAGCCACTGGATACTTGTTGTCATCTTCCTTGTACTCTCCTTGACGGTTGAGCTCCCATACTTCACGGCCTGCATAAATAAAGTGGATCAAGGTGGCTGGGTTCCACTAGTCATCGCAATAACCTTCTTCGTCATCATGTACGTGTGGCATTTCTGCACCGTGAAGCGCTATGAATTTGAGATGCACAGCAAGGTCTCTATGGCTTGGATTCTGGGACTGGGGCCAAGCCTTGGCCTTGTCAGGGTCCCTGGGAT | |||||||||
gi|8088262|gb|AW922437.1|AW922437 DG1_19_E08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGCAGTGGCATATGCAAGTCT EST sequence (targeted fragment marked with yellow): ATTGCACACGGGATATCAATCAGCAATACATCCTGGATCCTGCTTGCCCGGATGATGATCTGTGGAGCCCCAAGACTGTAGCAGAGACAGATGGAATGAGTAGGGTGATGCTAGAGTCTGCACTGCTTGCCTCCAAATGTACAGAATCTTTATACAGTCTATCCTACACTTGGGGGAATGATGAAACAGTTCAGGAGAGCCTTGGTGTCCGCAAGGGAACAATTGGAGAGTGGAAACGATTTAACCATGAATTGCTTTACAATCATGATATCCAGAGTGCAGTGGGGTACCATTCAAGGCTAGCCACAAAAGGATACAGGGCGCTGATATACAGCGGCGATCACGATGCTGTCGTACCCCATGTTGGCACACAGGCATGGATTAGGTACCTCAACTTGACCATCGTAGATGATTGGAGACCATGGTACGTTGGTGGGCAAGTTGCTGGATTCACAAGGAGTTATGCGAGTGGACTAACATATGCCACTGTGAAGGGTGCTGGGCATATCGCACCAATGTATAAGCCCTTGGAGTGCCAAAAAATGTTAATAAGATGGATTTCAGGGGATTCTCTTTGATATATGTCTAAAAGAATGGTCCATCACTTATTTGAGTGGGTAGCATGCTGTACCTCAAAGTCAAAATAAAGAAATTTTTCATGTCATGCAATGAA | |||||||||
gi|9850262|gb|BE595189.1|BE595189 PI1_47_B01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGCAGTGGCATATGCAAGTCT EST sequence (targeted fragment marked with yellow): GCACGAGGGATTCAAGAATCAAAGCCAGATAGGAAATGCATATGGCACTGCAGTGGTGATTGTTATGCTAGTTACAACATTTCTCATGATCCCAGTGATGCTGCTGGTATGGAAGAGCCACTGGATACTTGTTGTCATCTTCCTTGTACTCTCCTTGACGGTTGAGCTCCCATACTTCACGGCCTGCATAAATAAAGTGGATCAAGGTGGCTGGGTTCCACTAGTCATCGCAATAACCTTCTTCGTCATCATGTACGTGTGGCATTTCTGCACCGTGAAGCGCTATGAATTTGAGATGCACAGCAAGGTCTCTATGGCTTGGATTCTGGGACTGGGGCCAAGCCTTGGCCTTGTCAGGGTCCCTGGGATAGGCTTTGTGTACACGGAGCTGGCAAGTGGCGTCCCGCACATCTTCTCTCATTTCATCACCAACCTCCCTGCCATCCACTCAGTTGTTGTCTTCGTTTGCGTCAAGTACCTCCCCGTATATACAGTGCCAGCCGAGGAACGGTTCATCATGAAGCGGATTGGGCCAAAGAACTACCACATGTTCCGTTGCGTCGCGAGATATGGATACAAGGACATCC | |||||||||