| mature miRNA: TGGAAGGGGCATGCAAAGGAG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|31345326|gb|CD429683.1|CD429683 ETH1_14_H04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_14_H04_A002 5' TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAGCCTTGGCAAATCGAGCATTTCCTCTAAGTTCTAGTAGTAGGGATAGGAATCAGGGTCAGTTTCCTCTCCTGGCTGTAGCAGCAGCAGCAGCAGTGGAAGGGGCATGCAAAGGAGCACAAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATTCCTTCTGCTACGCTATGATTGCAACAGTCAAAGCCCAAAAATGCAAGCATCTGCAATTGCCATGTGAGGCAACACCGCAACGGCATTGGCCTCTCCACATTCCACCTCTGCATTGTAAGTTTCTCAGTCATTTCTGAACCTCAATTTGTGTTATATTAGCAGGTGAATCACATGGAGAGCTCCAGGACTTCTGAAGTCTGAAAATAAACCACGGATGCGGTCGACACGGATCTGGCGGGCAACAATGTCCAAGTACCTGCATGTGAACAGATCGTGGGGCTGCATTCCCAAACCCTGCAAACGAAAATTCCTTCACTTTTGTTAAAAATGAAATGCAA | |||||||||
gi|11266229|gb|BF317739.1|BF317739 OV1_12_G08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): CGCCACCAAACCGACGGCCACCTGGTCCACGGGCAACGACTCCGTCGTCCTCAACACCACGGGCCACCACTACTTCCTCTGCGGCTTCACGGGCCACTGCGCCGCCGGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCTCTGCTGCCCCTTCCGCGTCCCCCACCGCCGCACCGTCCCCGACCCCCTCCGGCTCCAAGCCCTCCGGCGGCGCCACGGCCGCGCCGTCGCCGCACCCCAACGCCGCGCCGAAGGCCCTCTCCGCCAGCTCCCTGGCAGCGACCGTCGCCGCGTCCCTGCTCTCTCTAGCCGCGGCCGTGCTTGCATGATCAGGGTCATGTGGTGTCTGTCGGCTAGGGGACGTTGCCTTTGTGAATTGTGAGGGACCGTACCGTGTCTGTGGCCGTATGAGCATTTAGCACCTGGATCTGTGCTTGTTTTCCCTTTTTTTTTCCCCCGCCTGGTTTCATGCACTGCTCTGATTCTGTGGATCCTGGTATGCCATGGGGATTTCTGCCGGTTGTTATTA | |||||||||
gi|8548422|gb|BE125832.1|BE125832 DG1_58_C06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): GCACGAGGCTCTCCTCACGCTGCTAGAGGCGCGTGAGCAGGAGTAACTGCCATCGCTCTGTGCCCAGCCGCGCGTCTCGTCCCTTCGCTCGCTGCTGCTAGCTCGATCGTCGGCCGGAGCCATGGGCGGTGGTGGCGCGGCGGCCANAAGGTGGACATCCGCGTCGCCGCCTCCTCTGCTGCCCCTTCCGCGTCCCCCACCGCCGCACCGTCCCCGACCCCCTCCGGCTCCAAGCCCTCCGGCGGCGCCACGGCCGCGCCGTCGCCGCACCCCAACGCCGCGCCGAAGGCCCTCTCCGCCAGCTCCCTGGCAGCGACCGTCGCCGCGTCCCTGCTCTCTCTAGCCGCGGCCGTGCTTGCATGATCAGGGTCATGTGGTGTCTGTCGGCTAGGGGACGTTGCCTTTGTG | |||||||||
gi|37710006|gb|CF760781.1|CF760781 DSAF1_66_E06.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_66_E06 TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): GCTGGTGCTAGGGAGGCATTCTTATATGGGATTCCTGCGATATCTATGTCATATGATTGGGTTGCGGGTCGGAGCAGTGTTAATGAGCTCAAGGTGTCTGCAGAGGTCTGCATGCCTCTGATAAATGCTATCGTGACTGAGATCAAGAATGGGACTTATCCTCAAGGATCATTCTTGAATGTAGACGTACCAACAGATGCTGCACACCACAAGGGCTACAAAATTACAAAACAAGGAACATATATGGCCAGAATTAGTTGGGAGCAAACGGTTTACAAGAAGCCTGCGGTAGAAAGTTACCAGACAGCAAACATGGATGTTGATGGCGAAAAGGATAGCGAACTAGTTACTTCAGAAAATGACCTACTGTTTAAGAGAGTGATTGTAGGGAGAAGTGCCGATGGAGTGGAAGGAGACGAAATGGACTACAAGTCCCTAGTTGATGGATACATCACTGTTACTCCTTTGGGTGCTCTTTCCCACTCAGAACCAGATGCCATACCCTATTTCAAAGCTTGCGTATCACGTCTGTGACCAGGATGGCAGGATGCTTACCAGACAGGCCAGACAGGACCTCCTGATGTCATCGCTT | |||||||||
gi|8088192|gb|AW922367.1|AW922367 DG1_18_D07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): CAAAGCAAGGAACATATATGGCCAGAATTAGTTGGGAGCAAACGGTTTACAAGAAGCCTGCGGTAGAAAGTTACCAGACAGCAAACATGGATGTTGATGGCGAAAAGGATAGCGAACTAGTTACTTCAGAAAATGACCTACTGTTTAAGAGAGTGATTGTAGGGAGAAGTGCCGATGGAGTGGAAGGAGACGAAATGGACTACAAGTCCCTAGTTGATGGATACATCACTGTTACTCCTTTGGGTGCTCTTTCCCACTCAGAACCAGATGCCATACCTTATTTCAAAGCTTGCGTATCACGTCTGTGACCAGGATGGCAGGATGCTTACCAGACAGGCCAGACAGGACCTCCTGATGTCATCGCTTGGCCACAGAGTAGCGAATAATCTACATAAATATCAAGCATATTATTTGAATTACCGCCACACTATATAGTAACGATAATTCATATTATTTGTGGCATGCATT | |||||||||
gi|10421873|gb|BE918604.1|BE918604 OV1_4_A01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): GCCATCGCTCTCCTCACGCTGCTAGAGGCGCGTGAGCAGGAGTAACTGCCATCGCTCTGTGCCCAGCCGCGCGTCTCGTCCCTTCGCTCGCTGCTGCTAGCTCGATCGTCGGCCGGAGCCATGGGCGGTGGTGGCGCGGCGGCCGTGGCGGCGGCGCTGGTGGTGGTGGTGCTGTGGGCGGGCGTGGCGTCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAACCCCGACTATGCCGCCTGGGCCAACTCCAAGAAGTTCCACCTCGGCGACACTGTTGTGTTCACGTACAACAAGCAGTTCCACAACGTGCTGGCAGTGAGCAAGGCGGACTACAAGAACTGCGACGCCACCAAACCGACGGCCACCTGGTCCACGGGCAACGACTCCGTCGTCCTCAACACCACGGGCCACCACTACTTCCTCTGCGGCTTCACGGGCCACTGCGCCGCCGGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCTCTGCTGCCCCTTCCGCGTCCC | |||||||||
gi|31345191|gb|CD429548.1|CD429548 ETH1_14_H04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_14_H04_A002 3' TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): GACTGTAGGTAGCTGGTATTAATCAAGTGAAACTACGAGTATACATACTGCCCGGCCCTAGTGAATTCTTCGCACATTCTGACTGATTCCCTGTATTCTGAAGCAACTGATGAGCGGGGCCAAATGATGCAATCATCAAGTGTAACTTGAGGAAATATACAAAGCTGCTAGTCGATGGTTCCATTTCACACTTGCATTTCATTTTTAACAAAAGTGAAGGAATTTTCGTTTGCAGGGTTTGGGAATGCAGCCCCACGATCTGTTCACATGCAGGTACTTGGACATTGTTGCCCGCCAGATCCGTGTCGACCGCATCCGTGGTCTATCTTCAGACTTCAGAAGTCCTGGAGCTCTCCATGTGATTCACCTGCTAATATAACACAAATTGAGGTTCAGAAATGACTGAGAAACTTACAATGCAGAGGTGGAATGTGGAGAGGCCAATGCCGTTGCGGTGTTGCCTCACATGGCAATTGCAGATGCTTGCATTTCTGGGCTCTGACTGTTGCAATCATAGCGTAGCAGAAGGAATGGAAGAGGCAGGCACAGGAGAGCCAGCGAGGCGTAGGTCGGCTTCCAGCCAAGCCTCGTGCTCCTCTGCATGCCCCTTCCACTGCTGCTGCTGCTGCTACAGCCAGGAGAGGAAACTGACCCTGATTCCTATCCCTACTACTA | |||||||||
gi|9847178|gb|BE592105.1|BE592105 LG1_224_D06.b2_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TGGAAGGGGCATGCAAAGGAG EST sequence (targeted fragment marked with yellow): GCACGAGGTGCCATCGCTCTCCTCACGCTGCTAGAGGCGCGTGAGCAGGAGTAACTGCCATCGCTCTGTGCCCAGCCGCGCGTCTCGTCCCTTCGCTCGCTGCTGCTAGCTCGATCGTCGGCCGGAGCCATGGGCGGTGGTGGCGCGGCGGCCGTGGCGGCGGCGCTGGTGGTGGTGGTGCTGTGGGCGGGCGTGGCGTCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAACCCCGACTATGCCGCCTGGGCCAACTCCAAGAAGTTCCACCTCGGCGACACTGTTGTGTTCACGTACAACAAGCAGTTCCACAACGTGCTGGCAGTGAGCAAGGCGGACTACAAGAACTGCGACGCCACCAAACCGACGGCCACCTGGTCCACGGGCAACGACTCCGTCGTCCTCAACACCACGGGCCACCACTACTTCCTCTGCGGCTTCACGGGCCACTGCGCCGCCGGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCTCTGCTGCCCCTTCCGCGTCCCCCAC | |||||||||