| mature miRNA: TTGAATAAGACGAGTGGTCAA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57809890|gb|CX611170.1|CX611170 ANR1_23_C01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_23_C01_A002 3', mRNA sequ TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): CTTATATTATGTTGCAAATTAATCATACTCATCATAAATACATGATTATTGGAAAGAGATCACAAAACCGAGCCAATTAATGCGAAAATACGTTACACATTGTTTGCAAACGCATGCAATTTTGTTTGTAATACTCAATCCATCCCAAATTGTAAGTCGTTTGACTTTTTAAATATCAAGTTTGACCACTCGTCTTATTTAAAGTTTTGTACAAAATATCACTTTTTTTTGGTTGTGTATTGGTTTATTAATAAAAGTTCTTCAAGAATGACTTAAATTTGCACAAAATTTTTGAATAAGACGAGTGGGGAAACTTAGGATAAAAAAAGTCAAATGACTTATAATTTGTTGGGATGGAGGGAGTATAATGCAAGGAAGAAATGAAACTGGATGGATGTGATGGATGGATTGGATTTTT | |||||||||
gi|45969490|gb|CN136542.1|CN136542 OX1_43_G07.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_43_G0 TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): GCAACGAACGCGCGCGCGCCGCCGGAACCATCTCGATCGCGGGCTAGGGCGACGACGGTGCCGTGGATTCCGCTTGATCGTTCGTCTTATTCGTCGTCGTCATGGGTGGTGGCCGGCTGCCGGTGGCGTGCTCCGCCGTCCTCGTCCTCCTCGCCGCGGCGGGATGCGTGTGGGCGCCGCGGGCGGCGGCGGCGCGGGAGTACGCGGCCATCCAAGGCGAAGAACGCGACGTTCCACCATGGCGCCAACTTCGCCATCACCGGCGCGACGTCCCTCGACACGCCCTTCTTCGTGGAGCGCGGGCTCGATAAGACGGTCTGGAACTCGGGGTCGCTGCACACGCAGATCCAGTGGTTCCAGGACATGAAGCCCAAGCTCTGTATTTCCCCAGACGAGTGCCGCGACCTGTTCCGGCGGTCGCTGTTCATCGTCTGTTTTTTCGGCGGGAACGACTACAACTCGCTGTTGTTCGCGTTCCGGCCCATCTCCGAGGCGCACGACTTCGTGCCCCACGTGGTGGAGTCCATCGGCAGCGGCGTCGAGAAGCTGATCGCCGAGGGCGCCGTGGAGCTCGTGGTGCCCGGCGTGCTCCCCATCGGCTGCTTCCCCGTCTACCTCTCCATCTTCCGGAAGCAGGCCGACGGGTACGGCGGCCGGAGTGGGTGCATCAGGGACCTCAACACGCTGTCGTGGGTGCACAACGCCGCGCTCCGGCGGAAGGTGG | |||||||||
gi|37705678|gb|CF756597.1|CF756597 DSAF1_6_B08.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_6_B08_A TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): AGATGAACCAACTCCGCTCGTTATCCAACCTTATCCATAGTTGAACAATAATTGTCAAATACAAACGAAAGTGCTACAGTAGCACTTTACAAAAAAAAAAAAAAATCACCAACTAAACAGCCCCATAGAAATGTTCAGTTCGCAATTGCAAAATACCTTTCCTTTCTTCTTTGCCGGTACAGCAGATTTAGTTAGTTTGCGCTTCACCTTACATAACTTATATAACCAAGTTCTCTGTCTCCTAGATTTTTTTTACTGAACTTCCTTTTTCTTCAGTTGTGCAGCACTAAGGGCATTTGTTTCCTGCACATTTGGGTGAACAGTTTATTTGCCATTACATGGGTTTTCATTGACAACACCAGTAGATGAATTCAGTTTATCCTCCAGCTGTGTACCAAGGCAATCAAGTCCATTGTCTAATACTCCATTCCAAATTATCAGACAGTTTGACTTTTTTATCCCAAGTTTGATCACTCGTCTTATTCAAAAAATTTCTTTGCATTTGCTCCGGGCCAAATATGAAGCTCACATGAACTTAGCATCAATACCAAGCTTATGCCGATACAGGGCCTCCCCCATCG | |||||||||
gi|30941379|gb|CD208362.1|CD208362 HS1_37_C07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_37_C07_A012 3', mRNA TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): TCGATTTGCATGGCATGCATGGAGCTTCTGATCTCCACGATACAAAATGGGTACACTCTCGACTCGACTCTTGTATATAAAAAAGATGGTACAGTAGTACTCCCTCCATCCCAAATTGTAAGTCGTTTGACTTTTTTTACACCAAGTTTGACCACTCGTCTTATTCAAAAAATTTGTGCAAATATAGTCAAATTTAAGTTATTCTTGAAGAACTTTTATTAATAAACCAATACACAACAAAAAAAAAGTGATATTTTATACAAAACTTTGAATAAGACGAGTGGTCAAACTTGATATTAAAAAAGTCAAACGACTTACAATTTGGGATGGATTGAGTACCCTATTATGGTACATGG | |||||||||
gi|33109186|gb|CF072527.1|CF072527 FE1_3_B05.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_3_B05_A002 3', mRNA TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): AACATTTGAGAATTCGTTTTATTCAGTTTTGCCTGATAGTTCTAGTCAACTGTTCTCATAAAAAGAGGTTGTAGCTTATCTTCAGTTGCCATATTATTTTGTTTGCTGGATATCTAGAACCAATAATGATTGTTTGATAATACGATTTTTTAATATCAAGGCTGGTGATTAATTCTGTGCTAATCTTGCGTTTAGAATCTCTTGATTTGCTTTACTGTGTCTTGCTTTAATCTTGAGAACCTACTTGATGTATTACTGAAATTTCGCATAGGTTAAAGAAACCCCAGAGCCAAGATCTCGAGGGGCAAGTAACTCGAGTCGATCCAGTAGAGGTGGCGGGGACCGTGCTGGACGCAGTTCAGTTCAATCTGGATCCAGTGATTATATGGCTTCAAGGTCATCAATATTGGGGCCTGCTGTGCCAGCTACGAATGCCATGCAGAAGCCAGCAGTTCCTAGTTCGTCCACAAACAAAGATGTGGTTCCTAATGGATCAGTTGGAGCACCACAATCATCATCTGGTTTTCAGCACAATTGGTTTGGGGTGCCAGGTCAGATGTCAATGGCTGATATAGTGAAAATGGGAAGACCTCAAGTGAGGTCTTCTGGCAAGCCTATGGCTGCAGCAAAACAATCTACAAGCACAGCCCTACCAACTACTTTTGATCAGGGCTTTCCTGCTCTCCC | |||||||||
gi|45993557|gb|CN150877.1|CN150877 WOUND1_72_B07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_72_B07_A002 3', mRNA s TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): CAACAGAATTCCAGCTCAATCATATTAGTATGTATAGTAATATAATAATAGCCATGACGCTGCTGATTTGCTCCTCCTTAAGACACTTGGCTAAGAATATCTCTGCAAGGAAAATGAAGATTGCAAACCGCCAAGCTCGAACATACATAAATATTACATGTTTGACTCCATAGCACTAGGGTGATAATCTGGAGTCGACCACAGAAATTGACAACTAGTCTTATTTATTGAGTACTCTAACGTTGGGAATCAATGGGTTACTATCAGTGATGGGAAGAACCACTTAATTCTCAGATCTGTCAATGAAGATGCGCAATGGGAAGAACCACCTAATTGTCAGATCTGTCGATGAAGATGCCATGTTGTACGTATTAGAAGGGCCGTGTCATCTTTCTGAACCTTGTGCTGCTTGATCTTCTTGCCCAGATTGGCGCACAAACTGTCCACGGACCCGAGGCCGCTGCTCAGCAAGCCTCTTCCTGCTTTGGTAGCGAACCTTTTTACCAAAGTTCCGATCTTTCCGCTTCAGTCTGAATTTGTTCAATGCAGCTTCTCGTTGGGGGAATCGATTCTGATACACATCATTGCCACTCCCACTCCCACTTACAATGCCACCTCCAGCGATATTTTGGCTCACGGGACCATTAACACTCTCTATGTTTGGTCTTGCAATATTGGGGACAGTGCTCGTTCCATTCTGGCCATTGCACCCATTATGACCAACTGAGACACCCCCATTCACACTATAGTTTGCA | |||||||||
gi|14514302|gb|BI075645.1|BI075645 IP1_23_C08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): CTCTGCTATCATGTCATTGGCTGAGACCCACAGTGGAAGGAAGAAGATTGTGACATCAGAGAATTTCTGCTGCCTGAAAGAACTGGCAGACACTGGTGACTTCGACGCCAAGAAGATCGTCAGGAAACTATCTACTAACAGACTGCAAACCATCTTCAGCAAAATATGGAGTGTCTAAGTTATCTCTGACTCCTTTTTCACTGAGGTTTAGCTGTAGTGTGTTTCATGTCCATAGTTTTTGCTTTGCTTGTAAGCTCGACACATCCATCAGTATGATTCCCTTGTGATATACTCCCTCCATCCCAAATTGTAAGTCGTTTGACTTTTTTTACCCCAAGTTTGACCACTCGTCTTATTCAAAAAAATTTGTGCAAATATAGTCAAATTTAAGTCAAAAAAAAAAAAAAAAA | |||||||||
gi|34441441|gb|CF428740.1|CF428740 PH1_17_C03.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_17_C03_A002 TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): ACATGTTTGACTCCATAGCACTAGGGTGATAATCTCGGAGTCGACCACAGAAATTGACAACTAGTCTTATTTATTGAGTACTCTAACGTTGGGAATCAATGGGTTACTATCAGTGATGGGAAGAACCACTTAATTCTCAGATCTGTCAATGAAGATGCGCAATGGGAAGAACCACCTAATTGTCAGATCTGTCGATGAAGATGCCATGTTGTACGTATTAGAAGGTCCGTGTCATCTTTCTGAACCTTGTGCTGCTTGATCTTCTTGCCCAGATTGTCGCACAAACTGTCCACGGACCCGAGGCCGCTGCTCAGCAAGCCTCTTCCTGCTTTGGTAGCGAACCTTTTTACCAAAGTTCCGATCTTTCCGCTTCAGTCTGAATTTGTTCAATGCAGCTTCTCGTTGGGGGAATCGATTCTGATACACATCATTGCCACTCCCACTCCCACTTACAATGCCACCTCCAGCGATATTTTGGCTCACGGTACCATTAACACTCTCTATGTTTGGTCTTGCAATATTGGGGACAGTGCTCGTTCCATTCTGGCCATTGCACCCATTATGACCAACTGAGACACCCCCATTCACACTATAGTTTGCAGCATGTCCTTCAACAGGAGGATCAAACACATTTGACGAACCACACTGAACATCTGATGATC | |||||||||
gi|30161686|gb|CB925415.1|CB925415 ABA1_33_G07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_33_G07_A0 TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): AAAGCAAATTCTCATGTATCTCTCTTTTTCAAAAAATAGCTGTATACATTCCTTCATAGGGGTTCCAAAACTTCTAACACAGTGTGAAAAAGAAAGTTGACTCTGAATTTTGGCATTGATCAACGGCCAAACCATTGTCTATGACATATGAAAAGTCCTCAGCCATGGTTAACGGTCACAACGGGGATCCGCTAATATGTTGGGATGGAGGAGTCAGCTTTAACCGCATAGGCATGAATTCCACCTGCGACATTGTAAACTTTTTTGAAACCCTGCAAAGTGATGGAAAATGAGGATTAAAAAGTCCAATATTATTCACATATTATCGAATGAAGAGTAAGAGCATCCTTTTGCAGCAGTGAAACCAATCACCTGTGACTGCAACCATTTAGCCACCTGCATTGAGCGCATGCCATGATGGCACTGAAACAAAATAAGATGGCAAGTGGCATTATGCACTGCTGCTAATATAATCAATTAACCAACTCGATTTTCTTGACAATAGAAAGTACTCAATCCATCCCAAATTTGACACCAAGTTTGACCATTTGTCTTATTCAAAAATTTGTTCAAAATTT | |||||||||
gi|14822837|gb|BI245432.1|BI245432 IP1_65_C05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): CTAAAAGCATAGTCATGTGATGTGTCTGACTGTCTTGAGTAGTTGAGTCTGATTTTATTGTTATTATGTTAACTTAATGAAGCACAACACACAGGAATCGCACGCACGCAGGATAATTCATTAACCTGAATGATGGATGACGTACCGTTGTCAGAGCCGCGGCGCTTACCGAGGTAGCGATGCTGACGGCGTCGAGTAGCGATGATGGCACCGTCAAGGTCAGGGAAAGAACGATGTGCTGCTGCCTTGAGGTCTAGGACGCAGAAGGCTGCCGGCGTCAGGGCGATGCTGCCGGAGTCGATGACCGGGAAAGGATTGATGGGGAGGCACGATCGCCGCCTGTTCGCCGAGTGGTTGATTGGCCCGGCTGTGCTCGATGCCCTAGCCCGCGGTGAGGAACTCGATCGATGCCCTAGCTCGCGCGGTGTCGATCTGCAGAGACATCGGGCTTCTACGGGAGAGGGTCACACGTTCGGGACAGGGGAGGGTCACACGATCGGGACATGATTCCTATAATCACGTAGTTTCTTTATTAGTTGTGATTATAGTTTCTTTATTAGTTGTGTGGTACTCAATCCATCCCAAATTGTAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTCGTCTTATTC | |||||||||
gi|45954376|gb|CN127947.1|CN127947 RHOH1_26_C07.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_26_C07 TTGAATAAGACGAG-TGGTCAA EST sequence (targeted fragment marked with yellow): GAGCTAGAATTTGAATGACGATATAAAAAGGGTTCTCCTTCCATCCCAAATTATAACATGTTTGACTTTTTTGACCCCCAGTTTAACCACCTCGTTTTATTCAAAAAATTTATGCAATAGTAAAATTGAAATCATTCTTGAAGAACTTTTATTAATAAACCAAGTCATGACAAAATATATAGTATTTTGCATAAATTTTTGAATAAGACAAATGATCAAATTTGATGTAAAAAATGTCAAACATCTTATAATTTAGGATGGATTAGCTTGACTCTCACATGGCATCTATGGATATTTCTAGAGACCTCTTGAAAACTGGAATACTGCCACCAATACTACAACTAGCTTGACTCGATCTCAATCAGATGGGTTTTGCACTTTAAACTGCAGCCGACCAAGGTCGAAAACATGCATTTTCCAATCCAGCAATAACTACAGTTCAGGATCAGGATCAAGGACAGTTTCGGTGTTTATTGGCATCAACCCAGTGCTTCTCACCCAAACAAAATACCGGCAGCCAATGAAGCAGAATCTTCTGCTGTTACAAAAAGCACTCTACAAATAACCCAGACGAAAGCAGACTGATGCCCTCGCTCACTTGAAATGGTAGAGGGGCAGCTCGGTGTTGAGGGGGTGGGACATCACGGTAAGCACATCCGTCACCGACACCATGGAGCTGATTGCTGCCTTCAGGATCTCCCGGGAGCACCCTGGCTTCACCATGGTCCTAACCTTGCCAAGATACTCTTTCAGTATCTCAATGTCGCCCATGTAGTCCTGGTTCTCAATGGTCAGTGTGATGGGCTTTGCGTCTGAACCAG | |||||||||
gi|34439537|gb|CF426836.1|CF426836 PH1_2_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_2_H04_A002 3 TTGAATAAGACGAGTGGTCAA EST sequence (targeted fragment marked with yellow): TTGGGGGATAGTGATAACTGATGCGTCTGCAATATTCATATCGACAATATACAAAATGCGAATGAATAATACAGCCAGCTTGCAGGTTGACAGTTTCACATCAGATTCAGCACACCAGGATCATCCTTACCTACTAGATTAGATTACAATAAATTCAGGATGTTTGATGTGTCAACAGACCAATCACTAGTTTCAATAAACAGTTGCCTAAACATAAGCTATTCCATCAGTAGTGACTACTCCCTCCATCCCAAATTGTAAGTCGTTTGACTTTTTTACCTCAAGTTTGACCACTCGTCTTATTCAAAAAATTTGTGCAAATATAGTCAAATTTTAAGTCATTCTTGAAGAATTTTTATTAATAAACCAATACACAACAAAAAAAAGTGATATTTTGTACAAAACTTTGAATAAGACGAGTGGTCAAACTTGATATTAAAAAA | |||||||||