| mature miRNA: TTTCTTAAGTCAAACCTTTT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57819777|gb|CX620990.1|CX620990 GABR1_55_G05.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_5 TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): CCGAAGTCAATACATTTAAATTTAATCAAATTTATAGAAAAAAACAGCAATATTTATGACACTAAATTGATATAACTAGATATGCTATGAAATATATTTTTCATAGTCTACTTGTTTCATGTCATAAATATTGATACTTCTTCTTATAAATTTAGTTGAATTTAAGAAAGTTTGACTTAAGAAACTGTAAAAGTTTGATTATTTGGAGACAGAGACAGCATTTCTTCCTATTGCAAAAAAGTGGGACGCGCGCAAACATTGAATGAATGAAACGTATATATAAACATGCTGAAAATAGCAAGACATCTAGCTTGATCCGCCGGCAGGAGGGGATTGCTTTTCCTTCCAGTTTGCACCACTAAACGTCATGACG | |||||||||
gi|31384606|gb|CD463338.1|CD463338 ETH1_43_H05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_43_H05_A002 5' TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): AAAATTAAAAAAATTTAAAGTTTATAAGAAACAGGAAAAATGGTTAGATTTGAGAAGCTCCTCTGGGAACAACTGGTTAACACCAAGATGTTTGGCCGTGAAAGAATTATCGGCACTCCTAAAAAGTGGTTTACTGCCAATAGACATAGAGAAGTCAAGGTTGCAGCCCACTACTACTATACCGGAGGCATCAGAGCCAGCATCTTTAAGGCTGTTGAGGGTGCTATGTCCTGGCTCTTCTGGAAGTGGCCTAGAGATATTGCCGTTAACAAAGGTCTTGCTATGGAAGACTTCTTCGTCCACCAAGAAAGAGAACTCAGAAGAGAATATCTTTTCGAACACATCATCAGACAAGCCTGCCATCCTTATCAACACTTGATGTTCAAGAGACGCAGAGCACGTTACTTCAAGGTTGAGAGAGCAGTCAGAGGATTTATGGTTCCTGAGTACCTTAAAAAAGAAGCTGAATCTCGCCTTATGGTCGACACCATTGATGTAAAGGACGAGTGGGAAGACTTCACCTACCTTAACTTCTGGTCTGACATGACTCCTGCTACCAGATATACTGCTATGCATCGTTTGATTCCTCTTGAAATCTTCAATGTCTATGGTATTTTCAGAGAAGAGGCCTGNGATAGATTCTTCTACAATGAAATCCTCTACGATTACTACACTGAAG | |||||||||
gi|45975412|gb|CN139845.1|CN139845 OX1_24_B04.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_24_B0 TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): GGATGACATGTGGATCCCACATGTCAATAAAAAAAATAGTATTGAAATTGATGATTATGCAAATAGATAAATAGGGTGTTTGATTTTGTTAGCATTCATGGAGAGGCTCTAATACAAGGGTGAGAAGACGATGTTTAGCGATTGACAGACAGGTCCTATACTTAATAAAATGGTTCAAGATTACCACAATCTATTGCAGCACCACTTGTTTATACTCCCTCCGCCTTCGAATAAATCAATTTGTAGAATTCATGCTAGTCAAACTAACTTTGGCCTTGTTTAGTTCCAAAAATTTTTGCAAAATAGGAATAATATCACTTTTGTTGTATTTGACAAATATTGTCCAATTATGGACTAACTAGATTCAGAAGATTCGTCTTGTCAATTCCGACTAAACTGTGTAATTAGTTTTTATTTTCATCTATATTTAATACTCCATGCATACGTTTAAAGATTCGATGTGACGGGAAATCTGAAAAAATTTTGCAAAATTTTTGAGGAAGTAAATAAGGCCTTTATAGAATAACTACATCTATCACAAAATGAACACCTCATGAAAATATATAAATCTAATGATACTAATTTGATACCATAAGTCTTAATATTTTTTTCAAGAAACTCGATCAATGTTTAAAAAATTTGACTTAAGATAACTTTAGAAATCTATTTATTCATGCAACACCGTTCACATATAGCAAATTTTAAGGAAAAAAAAAAGGAAGTGGATCCGTTGGAGATGCTCGAATCATTAGAACAGTGCTCCTGTAACATTGTCATACTAGTTTTGGTTGTGTTACTTTATAATCTCCTAACACGTCACACGAAAACTACAAAAATTACAGCGAAGTGAAT | |||||||||
gi|30969535|gb|CD226101.1|CD226101 CCC1_43_G08.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_43_G08_A00 TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): CCAGACTGGGAACTATTGTAATTTTGTCACAAAGTAACCTTAGCCAGTACATAGTTGTGTGCACCAATTTTAACCCCAACTTTGTTGCAATGAACCTGAAATACATGTCAACTTTGTCCCTCTATATGGTTGCCCGGATGATGATATGACTAGAGGAACATTTCACTTTACCCTACAATATCAATGCATAACAAATAATATGGTTAGCCCATTCCAAAATGTAGTTCTTTTAGTTTTGTACTAAGTCAAACTTCCTAACTTTGACTAAGTTCATATAAATCTGCACTAATATCTGCAACATCAAATTAATTTCACTAAATCTACCATGAGGTATTGTATATATTAATACATTTTTTCTCGAAACTTGATCTAAGTTAGAGAAGTTTGACTTAAGATAAAGTTAAAATGACCTAGTGAACTACATTTCAGAACGGAGGGAGTAACTACTTTGCCGGCCCACTTAGGCTTTCGACCACTAGCCTGCGTAGTTGCATCTTCGTTTTCACTATAGCGCTTTTACTGAGATTGAATTGGCGGCACATATGAATGCATCTTAGACCCCTTTTTTTGGCAACTTATTGTCAGTTGAATTAATACAGGCTCTTTCTTCATCTTGCTGCAAGAGAATTTCGATGTGTTCAACTGTTCATTCATGTATAT | |||||||||
gi|18060669|gb|BM323137.1|BM323137 PIC1_8_B04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): GCACGAGGGCTGATCACAAGCCGGTACGGCCAGCATGGTTTGATTTAAGAAGACCAGGAATAATTGATGTGAACCAGCTAAAGGAAGACAAGTTCTATGCAAAGGTAAACCTTCGTGTTTGCCTTGAAGGTGGTTATCATGTGCTTGATGAGTCCACACAATATTGCAGTGATCTCCGTCCAACAATGAAGCAGTTGTGGAAGCCACCAATTGGCATGCTTGAAGTTGGCATTTTAAGTGCAAATGGTCTCAATCCAACAAAAACCAGAAACGACCGTGGGTCGTGTGATGCATATTGTGTTGCCAAGTATGGTTCAAAATGGGTCCGGACACGCACAATAGTTGACAACTTGAGCCCTCGATTCAATGAGCAGTACACATGGGAAGTCTTTGATCATGGAACTGTACTCACAATTGGTCTATTTGACAACTGCCACATAAGTGGAGATAACAACCACGGTTCCTCAGGCCACA | |||||||||
gi|18064770|gb|BM325633.1|BM325633 PIC1_46_H10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): GCACGAGGCTGATGTTTGTCGCAGCAGAGCCTTTTGAGGACGACTTGATCATATCAGTAGAAGACCGTGTAGCACAAAACAAAGATGAGGTGATTGGTGAAACTATCATACCACTCGCAAGGCTTCCAAGGCGGGCTGATCACAAGCCGGTACGGCCAGCATGGTTTGATTTAAGAAGACCAGGAATAATTGATGTGAACCAGCTAAAGGAAGACAAGTTCTATGCAAAGGTAAACCTTCGTGTTTGCCTTGAAGGTGGTTATCATGTGCTTGATGAGTCCACACAATATTGCAGTGATCTCC | |||||||||
gi|30944720|gb|CD210026.1|CD210026 HS1_56_E12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_56_E12_A012 5', mRNA TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): AAAAAAAAAAGTTCGACTTAAGAAAAATAATACACCACACTGCTTTAATGGGGCGATCACCATGCTGTGAGAAGATTGGACTGAAGAAAGGTCCATGGACGCCGGAAGAGGATCAGAAGCTGCTTGCCTTCATTGAGGAGCACGGACATGGGAGTTGGCGAGCATTGCCTGCGAAGGCAGGTGAGTATGGACAAACCTGAATTCTACCATCTTCCAAATGAACAAAGTCTGTGAGATCTCGACCAACATCCTGCAGGCTTGCAGAGGTGTGGTAAGAGCTTCATTGAGGTGGACAAACTACCTGAGGCCGGACATCAAGAGGGGCAAGTTCAGCTTGCAAGAAGAGCAGACCATCATCCAGCTTCATGCTCTTTTAGGCAACAGGTGGTCGGCCATTGCAACACATCTACCAAATCGCACAGACAATGAGATCAAGAACTACTGGAACACACACCTCAAGAAAAGGCTGGCCAAGATGGGGATCGATCCTGTCACCCACAAATCTCTCAGTGGCACTCTCACTGGCACCACAAACAACAAATCAGCCAAGGCTGCGGCAAGCCTCAGCCACATGGCACAATGGGAGAGTGCCCGCCTCGAGGCTGAGGCACGGCTGGCTCGAGAATCGAAGATTCGAACAGCAACGCCCACACCAACTGCACTACATGCGCAGCCAACGAATGTACCTGCCTCTGCTGCTTCTCCATGCCTTGACGTGCTGCATGGATGG | |||||||||
gi|30944720|gb|CD210026.1|CD210026 HS1_56_E12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_56_E12_A012 5', mRNA TTTCTTAAGTCAAACCTTTT EST sequence (targeted fragment marked with yellow): AAAAAAAAAAGTTCGACTTAAGAAAAATAATACACCACACTGCTTTAATGGGGCGATCACCATGCTGTGAGAAGATTGGACTGAAGAAAGGTCCATGGACGCCGGAAGAGGATCAGAAGCTGCTTGCCTTCATTGAGGAGCACGGACATGGGAGTTGGCGAGCATTGCCTGCGAAGGCAGGTGAGTATGGACAAACCTGAATTCTACCATCTTCCAAATGAACAAAGTCTGTGAGATCTCGACCAACATCCTGCAGGCTTGCAGAGGTGTGGTAAGAGCTTCATTGAGGTGGACAAACTACCTGAGGCCGGACATCAAGAGGGGCAAGTTCAGCTTGCAAGAAGAGCAGACCATCATCCAGCTTCATGCTCTTTTAGGCAACAGGTGGTCGGCCATTGCAACACATCTACCAAATCGCACAGACAATGAGATCAAGAACTACTGGAACACACACCTCAAGAAAAGGCTGGCCAAGATGGGGATCGATCCTGTCACCCACAAATCTCTCAGTGGCACTCTCACTGGCACCACAAACAACAAATCAGCCAAGGCTGCGGCAAGCCTCAGCCACATGGCACAATGGGAGAGTGCCCGCCTCGAGGCTGAGGCACGGCTGGCTCGAGAATCGAAGATTCGAACAGCAACGCCCACACCAACTGCACTACATGCGCAGCCAACGAATGTACCTGCCTCTGCTGCTTCTCCATGCCTTGACGTGCTGCATGGATGG | |||||||||