| mature miRNA: CAACAACAACAAGAACAAGCT species: Taraxacum officinale database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90331592|gb|DY834353.1|DY834353 CTOZ10292.b1_H06.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ10292, mRNA seque CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TGATGATGTTGTTAATGACGAAATCGCCCTTGACGAAAAAGATTTATGTGATCCCGGGATGATATCGGAGTTAACAAACTTTAAAACATCCAAAAACAACACAACGGGAGGTACCTCGTCTAGCGGTGGGTCAGGGAAACAAGAGGATAAGGATTCATCGTTGTATGGGAGCACCACAATAACATCCTTTGCTACTATGAATTTTACCACAATTACTGATCGATGATTTGATTGTACGTCATTTGTTGTTGTTGTTGTTGTTGTTGTCTGTTTTGTAGACGAATTCTTAAAAAGAATTTGAGAGAAAAATGATGGGGGAAAGTTGGTAATTACGAGTTTGCCGATTAGAGATGGCGTAGAGTGGTTATTGTTATTGGTTTTTTGGTTCACTTAAGAACATGATCGAGATATTAACAGTTATACAAATTTCTACATGCTTTGTTTGAGC | |||||||||
gi|90260119|gb|DY815636.1|DY815636 CTOX4152.b1_P06.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX4152, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): GGGCTCTGAGGAATTCACCTCCATCTTCAACAGTCATGACCTGAGCACCCTTTGGGCCCTTGTTTTATACGCCTAAACCATTCAAGGGCCCTATAAGTGTTTTCGTTGATCTGGAACGATTGATGCTTTGCTGGAAAATTAGGAAGAGGGAAAACTTTACATACTTTTCGATTACATCTTCTCAAGGGGTGGGGGGTTCGGCGGTTGTTGGTGGATGAATCGAGATCTGATATAAGGTGGATTTGTTTTTGTTTTTGTTGTTGTTTTGACTGATTTTGATGCTCATTTGCTCCGATCATGGAATCGGACATCCTGCCTGCGATAAAAATGCTGAAGTCATGTGAATGCGGGTATAATTGTTCTAGCCCTACTGTTAACGGGGCATGTACCCGAACATGGATTCGATCCGTGAAACGAAAACTCGATGAAGTTGAAGTCGAAAGAGAAAAGTTCATGATCTTGTGTCCCGAAGTCGCTCACATCGAGATTGAAAACGAATGCGGTGCGTTACGCGATATGGTTACCAGTCAACAAAAATCGATCCGTGATCTTTCCACTGAACTTGAAGAAGAACGCAACGCAGCTTCTTCAGCTGCAAACGAAGCCATGTCCATGATCCTGCGATTGCAACGCGAAAAAGCTGAAATCGAAATGGAGGCGCGTCAATTCAAACGGTTTTCGGAACAGAAAACAAATCACGATCAACATGAAATCGCGGTACTAGAAGATCTGCTGTATAAACGCGAACAAACAATCCAATCCCTAACCTGTGAAGTCCAGGCGTATAAATACAGAATGATGAGTTACGGACTCACCGAATCCGAAGCAGAAGGGGAAAAATACGTCATCACAAGCAGTAACAGCATCGCAGCAAATTCAG | |||||||||
gi|90253906|gb|DY809423.1|DY809423 CTOX17927.b1_M18.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX17927, mRNA seque CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): GCATCGGCGGGGGAGGAATTCCACCTCCATCTTCACAGTCATGACCTGAGCACCCTTTGGGCCCTTGTTTTATACCCCTAAACCATTCAAGGGCCCTATAGGTGTTTTCGTTGATCTGGAACGATTGATGCTTTGCTGGGGAATTAGGAAGAGGGAAAACTTTACATACTTTTCGATTACATCTTCTCAAGGGGTGGGGGGTTCGGCGGTTGTTGGTGGATGAATCGAGATCGGATATAAGGTGGCTTTGTTTTTGTTTTTGTTGTTGTTTTGACTGATTTTGATGCTCATTTGCTCCGATCATGGAATCGGACATCCTGCCTGCGATAAAAATGCTGAAGTCATGTGAATGCGGGTATAATTGTTCTAGCCCTACTGTTAACGGGGCATGTACCCGAACATGGATTCGATCCGTGAAACGAAAACTCGATGAAGTTGAAGTCGAAAGAGAAAAGTTCATGATCTTGTGTCCAGAAGTCGCTCACATCGAGATTGAAAACGAGTGCGGTGCGTTACGCGATATGGTTACCAGTCAACAAAAATCGATCCGTGATCTCTCCACTGAACTTGAAGAAGAACGCAACGCAGCTTCTTCAGCTGCAAACGAAGCCATGTCCATGATCCTGCGATTGCAACGCGAAAAAGCTGAAATCGAAATGGAGGCGCGTCAATTCAAACGGTTTTCGGAACAGAAAACAAATCACGATCAACATGAAATCGCGGTACTAGAAGATCTGCTGTATAAACGCGAACAAACAATCCAATCCCTAACCTGTGAAGTCCAGGCGTATAAATACAGAATGATGAGTTACGGACTCACCGAATCCGAAGCAGAAAGGGAAAAATACGTCATCACAAGCAGTAACAGCAT | |||||||||
gi|90252021|gb|DY807538.1|DY807538 CTOX15744.b1_P24.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX15744, mRNA seque CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TCTGTGATCATCTTAAATGGGAAAAAGCTTGTGTGTGTTCTTGTTGCTCTTTGCTCTCTTTGCTACAGATGGGACATTGGTGAGTATGACAGAAGCAAGGATGTGTGAAACACACCACAGTTCATTTAGTTGTTTAAACGACTCGCGTTGTAATAAACATTGCGAAAAAGACGGATTTACTAGCGGCAAATGTGATGGTATGACCCGCCATTGTAAATGTTACAAGCCGTGTGCTTGAACATATGCTCTGAATATATAAAACTACTTCTACTTTGTGCATGACTCG | |||||||||
gi|90342737|gb|DY840375.1|DY840375 CTOZ6912.b1_P24.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ6912, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): CGCGGGGGGAAGAGAGTCCCATGACAAGGCTGAGGAAGCGTGAGCCACACGTCTGTAGATTCCAAAATACTTTTGCTTTGTTGACTACCTTCAATGAAGTCGATATGACAAACTTGATGAAGCTTCGATCTGAATATAAAGAAGCTTTCCTTGAGAAGCATGGAGTGAAGTTGGGACTCATGTCTGGATTCGTGAAAGCTGCGGTTAGTGGGCTCCAGAACCAACCGATCATTAATGCTGTGATTGATGGAGATGACATCATATATAGAGATTATATTGATATCAGTATTGCTGTTGGTACTCAAAAGGGTCTGGTGGTTCCAGTGATCCGTGATGCTGAGAAAATGAACTTTGCTGAAATAGAAAAGACAATCAACGGTCTAGCTAAAAAGGCCACCAGTGGGACCCTCTCAATTGATGAAATGGCTGGAGGTTCTTTCACCATATCCAATGGTGGTGTGTACGGAAGCCTTCTAAGTACTCCCATCATCAACCCTCCACAGTCGGCTATATTGGGAATGCACTCGATAGTGAACAAACCGATGGTGGTTGGGGGTGAAATCAAGGCAAGGCCAATGATGTACATCGCCTTGACTTATGACCACAGATTGATTGATGGTAGAGAGGCTGTGTTCTTCTTGAGGCGTATTAAGGATGTTGTTGAAGACCCCAGAAGACTGCTTCTTGATATATAAAGAAACACAGCAACTTGTTTTTGTTTTTGTTTTTGCAAAAGCGGAATAAAAAACATGTTTTTGAGATCAGAACGATAGAGCCTTGTCCCACTGGCTACATTGATTCGTTTTGTGGATAATGTGCATTTGAACTTTTATGTTTGTTTTTTGACGGCAAACGGTGTTTCTTTTG | |||||||||
gi|90319753|gb|DY829120.1|DY829120 CTOY4797.b1_J23.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY4797, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TGTACTCTTCATCCCGATAGATTTCTCACTGAATTCGAAGTTCAGTCAATTTCTCCATGAACTTGGATCAGGGAATGAGGTCGGCGATGAATTAGTTAAGTCATTTTTTGTTATAATTACATCCAGGCTTCTAAAATTTGATGTTTCGAACTGTGAGGCTATAGAAAACTGATTTACTTTCGCTTTGGTTTTAATTACATTTAGGATCCTAAAATTTGATGTAATCGACATATTTTTTGGATTTATTACAGTTCGTTTATGTTGTTGTTGATTGCTTCTGGATTTTAGTTTGGTTTATGGATCGACGAGGCTTTGTTATGCCCGTTTCCGCTCGACTTCTTGTCGAGTTCAATCAAACGGAACTTAATCACTGGTGAATCTTTAACTCCTGACATGACCTAACTTCTATTGAACACGGACTTGGAGGATCAAATCGCCCAATTTAGGGGCGAAAAATGATCTATAGAGACGCAATTGGGAAAACCCTAGAAGGTATATGTACAGATGTGGTTTTGATTTTGGTCGGCAACCATAAATGGTGATTGTCGCTGTGCATGCTGAAAACTTCGAATCTTTGAAATTAAAGAGTCTCGGAGTTGATTTGTAATACCCTGAGAAGAATATTTCAAGCATGAATCGATCAAATCTACTGATTGATTCTCCTTGGCTATTGATACGATCTTTATTTGTTTTACAGAATTTGGATTGTTTAATATCAAATTGGTTATTGCGATTTTCTTTATTAAATTAATCTCTATTTCACCTGCTCA | |||||||||
gi|90340204|gb|DY837842.1|DY837842 CTOZ4558.b1_L12.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ4558, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TATATGTCTTCATAGCGACAGATTTCTCACTGAATTCAACGTTCAGACGCTTTCTCCGTGAACTTGCATCAGGCACTGATCTCGGCTATGACGGAGCTAATTCAGTTTTTGTTTAACTTACCTCCCGTCTTCTCAAATTTGATGTATCTCACTGTCAGGATCTCGGAAACTGATTTACTTTCGCTTTGGTTTTAATTACATTTGAGCATCCTAAAATTTGATGCTAATCGCACATATTTTTTGGATTTATTACAGTTCGTTTATGTTGTTGTTGATTGCCATG | |||||||||
gi|90260529|gb|DY816046.1|DY816046 CTOX4589.b1_J20.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX4589, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TATTATTCCTTACCCAATTCCGGCATCAATCGCTACTACCTTTTGTTGTTGTTGTTGTTGTTGTTCTTAGCTTTCCTCTGACTTTTCCTACTATTCCGTTAGTTTTTGGGGTTCTCTTGATCTGATTTCCAGAAACAGAAGTTACACCTTGTGAGATCAATCTCAATTTTCGGACGATTACGATGCAACAAGATCCGCGCAGAAAGAATCCAAAAGAGGTTGAATTCTTCACGGAGTACGGTGAATCAAATCGGTACAAAATCTTGGAGATCATAGGGAAGGGAAGTTACGGAGTCGTTTGTTCCGCTATTGACACACACACCGGGGAAAAAGTCGCAATCAAGAAAATCACCGACATCTTTGAACATGCCTCCGACGCTATTCGTATCTTGCGTGAAATCAAATTACTCAGGCTTTTAAGACATCCAGATATCGTTGAAATTAAACGCATCATGTTACCACCATCAAGACGTGCCTTTAAAGATATTTATGTAGTCTTTGAACTCATGGAATCCGATCTTCACCAAGTCATAAAGGCCAATGATGACTTAACACATGAACACCATCGTTTCTTCCTCTATCAAATGCTACGAGCTTTGAAGTATATGCATACAGCAAATGTGTACCATAGAGATCTAAAACCGAAGAATATATTAGCAAATGCAAATTGCAAGCTCAAAATATGCGATTTTGGACTAGCTAGAGTTGCATTTAATGATGCACCAACAGCCGTTCTTTGGACCGATTATGTGGCAACAAGATGGTACAGGGCACCGGAGTTATGCGGATCATTTTCTTNCAAGTATACTCCGGCTATTGATATATGGAGCATTGGGTGTATTTTTGCAGAAGTGTTGACTGGAAAA | |||||||||
gi|90283062|gb|DY821224.1|DY821224 CTOY13094.b1_K09.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY13094, mRNA seque CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): GCGGGGGTGTTTTGGTTTTGTTTTGAACGGAATCGCGACTCTGGTGTTGTGCTCTTGCGTGATCAGCTGTTTTATGGTGTGCGAATCGTTGTTATCTGAAGAAATCGGGTTCGATCTCTGTGATCACTTGTGTTTTAGCTTGATCACGATAGAGGAAGTGGTTTGATCGGTTAATTGATTCGATAATGGTGGATTTCAGTGATAAGGGATCAGACTGTGAAGATATGATGAACAGCAAGAACAGTCCAGATAGATGCGGATCATCGTCATCGGACGGTGGTAGCCATTTGATCAAAACATGTGCTGATTGTGGGACCACTAAAACCCCCCTCTGGAGAGGCGGTCCTGCTGGCCCTAAGTCTTTATGCAACGCTTGTGGAATCAGAAGCAGAAAAAAGAGAAGAGCACTTTTGAGGCTAACAAAAGACGAGAAAAAGCCAAAGCAAATCACCGCCGGCGCCGGAGAAACCTCTACATCCGGCGGAGATAGTCAAACAAGCGGATTGACCAGCAATAAAAAAAGTCAAATGGGTGATTTTTGTTTGAAAAGAAAGCTTATGGCTCTTGGAACGGAAGTTGTGTTACAGAGACCAAGATCCGCCATTACTAAACAAAGGAGGAAGATAGGTGAAGTAGAACAGGCTGCACTTTTATTAATGGCTTTATCTTGTGGATCGGTTTATGCTTAATAATCAAATAATTAGTTAAGTTTAGTAGTTTGATTTTGTTGTTTTTGTGTTTAAGATTAAGAATCAAAAAATTAAGAGATAGATGATGTCGGTATCTTTAAGAACAAGATGTATCTTGTAGGCTGTTCTTTTTTGTTCTC | |||||||||
gi|90345134|gb|DY842772.1|DY842772 CTOZ9266.b1_C13.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ9266, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): ATGTACTCTTCATCCCGATAGATTTCTCACTGAATTCGAAGTTCAGTCAATTTCTCCATGAACTTGGATCAGGGAATGAGGTCGGCGATGAATTAGTTAAGTCATTTTTTGTTATAATTACATCCAGGCTTCTAAAATTTGATGTTTCGAACTGTGAGGCTATAGAAAACTGATTTACTTTCGCTTTGGTTTTAATTACATTTAGGATCCTAAAATTTGATGTAATCGACATATTTTTTGGATTTATTACAGTTCGTTTATGTTGTTGTTGAC | |||||||||
gi|90339993|gb|DY837631.1|DY837631 CTOZ4363.b1_F11.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ4363, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TATAGTCTTCATCGCGATAGATTTCTCACTGAATTCAAAGTTCAGACACTTTCTCCGTGAACTTGCATCAGGGAATGAGGTCGGCTATGAAGGAGTTAAGTCAATTTTTGTTTTAATTACCTCCCGGCTTCTAAAATTTGATGTATCTAACTGTCAGGCTATAGGAAACTGATTTACTTTCGCTTTGGTTTTAATTACATTTAGGATCCTAAAATTTGATGTAATCGACATATTTTTTGGATTTATTACAGTTCGTTTATGTTGTTGTTGATTGCTAAGA | |||||||||
gi|90255871|gb|DY811388.1|DY811388 CTOX20094.b1_L07.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX20094, mRNA seque CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): TGTTGAAACGGTGAACATTACCCATTCCTGCATCTTCCATGATTCGTTCACATAGTGTATCTGGTGATCTTCATGGTGTACAACCTGATCCTGTAGCTGCTGATATTCTTAGAAAAGAACCAGAACATGAAACTTTTGTCCGCCTTAAAATCAGCCCAAATGAGACACCATCACCTGATGAAGCAGAAGTCTACAGGGCTTTACAGGTTTGCCTTGAAATGAGAAACAGTTATGTATTCAGGGAAAGCATTGCTCCATGGGAGAAAGAAGTCATATCTGACCCTAGCACTCCAAAAAGAAATCCAAATCCTTTTGATTATGTCCCTGAAACAAAATCTGATCATTACTTTGAAATGGAAGATGGAGTCATTCATGTTTATGCAACTGAAAATTCAAATGAGAAGCTTTTTCCTGTTGTTGATGCAACAACGTTTTTCACTGATTTGCATCATATACTTAAAGTGATAGCTGCTGGGAATACAAGAACTGTATGCCATCACCGCCTTGGTTTACTTGAACAGAAATTCAACCTTCATTTGATGTTAAATGCGGATAAAGAATTTTTAGCTCAAAAAAGTGCACCACATCGTGACTTTTATAATGTCCGGAAGGTGGACACTCATGTTCATCATTCTGCATGCATGAATCAAAAACATCTCTTGAGGTTCATAAAATCCAAATTGAGAAAAGAACCTGATGAGGTTGTAATATTTCGTGATGGAACTTATCTGACTTTAAAAGAGGTTTTTGAGAGTTTGGATTTAACAGGTTATGACCTANATGTTGATCTGTTAGACGTTCATGCAGACAAGAGCACATTTCATCGTTTTGACAATTTAACCTCAAGTACAATCCATGTGGTCAAAGTAGACTC | |||||||||
gi|90344574|gb|DY842212.1|DY842212 CTOZ8693.b1_I14.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ8693, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): ATTTTCATCATATATCACCGGCTCCCACCTCCTAATTCATTCAAATCTATCTACTCTCAGGCACCATCGGCAACCATGGCTTCAAAAGTCAACAGTATGCTCTTCCATCTCCTCGTCGTCTTCTTCGTCGCCTCCGTCGTCAGATCCTCTGATCCGGATTGTGTGTACACCATTTACGTCAGAACTGGATCAATACTTAAAGCCGGCACAGATTCCATCATGACGTTAACACTTTACGACGCTGCCGGTTATGGGATTAGGATCAACAATCTAGAAGCTTGGGGTGGGCTGATGGGTCCTGGGTACAACTATTTCGAGAGGAGCAATTTGGATATTTTCAGCGGAAGAGGTCCTTGCTTGACTGGACCCCCGTGTGAGATGAACATTACCTCCGACGGGACCGGGGCTCACCATGGTTGGTATTGTAATTACATTGAGGTAACGACTACCGGAGCACACGTCCCCTGCGCACAACAGACATTCACGGTTGAACAGTGGCTAGCTACCGACACGTCACCATACGAACTTACCGCCATCAGAAACTACTGTGGATCCGACGGGGACGGTAGTTTATCCGCTCATCGGCGGCATATAATCGGCGGTTCTGATTCGTCACTGGTTTCATTTGTGTGAGAGGCGATCGGATGGAAAATGTGAGGTTTGAAGATGAATTTCCATCAAATGGTTTTGATTTTGATGTTAAACTACATCGAGGGTTTGATTTTGTTGTTATTGTTGAGATCGGCATCCCACAATAAACTCTTGAAGATCTCTTCATTCATAAATTAGGGGTTTATTCGTGTGCATTTCTAGAAAATTTATCAATAAAAATAAACTGTGTGATG | |||||||||
gi|90340757|gb|DY838395.1|DY838395 CTOZ5064.b1_O17.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ5064, mRNA sequenc CAACAACAACAAGAACAAGCT EST sequence (targeted fragment marked with yellow): CACTTGTTGTCTTTTCAATGAAGGTGCTGACTCACTAAAACCACCTTCTGAAGGTGAAGTTTTGTCTAAACTGATAAGTTCAGTGGAGGAAACAGGAGCAAAATACTCAGTCTTATATGTTTCAGACCCTCTGAATGTTCTTCGTTATCCTTCATACCGCCAGCTGGACAGGTTTCTTGCACAGTCATCAGGAAATTCATCAGATGATTCCGCGTGTGATGGAGTTTGCCAGATTAAATCATCAATGTTGGAGGGACTTTTTGTGGGACTTGTTTTGCTGATAATTTTGATTTCGGGGCTTTGTTGTATGGCGGGGATAGATACCCCAACAAGATTTGAAGCTCCTCAAGATAATTAAAAAAAGTTTGCAAGGAAAAGAGTTATTGTTTGTGGTGGTCATATTATTATTAGTTTGTTTGAGGTTTATTTATTATGTGTCAATAATGGCTTGGTTTGGTTTTGTTTTGTATTTCTTTAAACACTTGGTGACACTTTTTGTAATGTCATAAAACCAACATAAGCAAATTCACTCAAAACACCAAGTACCAAACTGTGTTTTTTCTTGGAGTTCATAGTAAACACTTGGTGCTTGTAGTTTTTTTTTGTTGTTGTTATGGAACTTTAAACAATAGTTTAAAC | |||||||||