miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCATTTTGGGACGGAGGGAGT
species: Taraxacum officinale
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90315950|gb|DY825350.1|DY825350 CTOY16911.b1_M03.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY16911, mRNA seque 

TCATTTTGGGACGGAGGGAGT
|||||||||||||||||||||
AGTAAAACCCTGCCTCCCTCA

EST sequence (targeted fragment marked with yellow):
CACGATCCTAGAGCCCCATAATATATCTTAGAAGTCTGCCGTTCACAACAACACTCAAGCTACCGGATTGGTTATGGGAACAGAAGTTGATCGCGACTATGGAAAGAAGGTTGAGGAATCCATTAGATTACTAATAGAAGGTGAATCAGCAAGAACGTATAGTTCCAAGCAAGCTAATGTCACAATTTGTATGGTACCTAATACACTTCGAAATCTCAACCCACTTGCCTATACACCTCGAGTCACCTCAGTTGGTCCTCTTCACAAAGAGGCCCAACATCTAAGAGCTATGGAAGAGCACAAAGTGACTTACATGTATCGACTATTTTGTCGAACCGTGGAATCCACGAACAAGGACATAGAGCAAATAACTTGTACATGTGTCCAAGCCGTGCTTGGGCTTCTAACACGTGTAAAAGCTTGCTATGCACCATGTTCTACAATCTATGATGATTTTATGCTAGCAGAAATGATGGTTATTGATGGTTGTTTCATACTTGAGCTTCTCTGTAGGTTCGAGTATGGAATTGGAGAAGGTGATCCAATTTTTGACAATATTCTAGTGCTACGCGACATTAAACACGACTTGCTACTACTAGAGAATCAAATGCCTTTCTTTGTTCTTGAGATATTGTTCAGGATCACTATGAAACGAATGAAGTCCACTTCATTAACCGACCTTGTCTTTTATTTCTTCAAGGATATGAGTATCTTGAATAATACTCCCTCCGTCCCAAAATGATAGTCCATATTTCCTTTTTGGTTTGTCCCAAAATGATAGTCCACTTCTAAAAATAAATAACCATTTTACCAAAATGTCCTCATCATTAATGTATCAATCAATATATTAATAATGGTATTAAATGTAAAGTAAGGGCAAAAAA


gi|90319575|gb|DY828942.1|DY828942 CTOY4631.b1_M05.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY4631, mRNA sequenc 

TCATTTTGGGACGGAGGGAGT
||||| |||||| |||..|||
AGTAACACCCTGACTCTTTCA

EST sequence (targeted fragment marked with yellow):
TTCGAACAAACCCTAACGCCTTCCCTCCGCCCTCAGTTTATCCCATACGCGCATATTTCTTGTGTCTGCGTCTCTCTAGCCTCTACTGAGCGTGAACTCACGAACAGCAATTTCCCAACTGCATTCGTCTCGACTCTCTCTCTCTCTATTAACCTCTCTGCTATCGCATCCTAAGTATCAATTAGGTTATTAGCTAAGCAAACGGGGATTAGGGTAATGGCTGAAGAAGTTCAAACGCAAGAAGCTGGAAAAGGCCCAAGGAAGAGAAACATAGGTCACAAGAAGGGTAAGGGGAAGAAGAAAATGAAAGTCTTTCATGGAAGTGGTCAGCAGAAGGCTAAAATGGATGGAAAAACAAAAAAGCTTTTCCGGAAAAGGGCAAGAGATTACAATTCCGATGATAGTGAGGATGATGCTAATGATATAGATGATGAAGAAGAGCCTGCCCCTCCAATGAAGTTTCAAAAAGAGCAGGTGGATGATGTAAATGAGGAAGAAGACGAAAAATCTTCAGAAGAAGAAATGGATGAAGATGTTGATGTCAGCAATGAAGTTTCTGATGATGAAGATGGCGAAATACAACCTGGGATTATGAAGTTTTTCGAAGGAAACACGTCTTTTAAAAAAGCGTTTAAGAGAATAGTAAAGAGAAGTGGAACAGATGATGTTCTGGGTCCTGTGTTATCTGCTTACAAAAAGCTTGTAGTAAAAAAACTTGCTGAAGAAGTTGATGAAAGGAAAGTTAAGGGAGATGCAAAAAAGGAAAAACACTGTTAGGAGAAAAGGACATGTAAAGCCTGATACTTTCTCAGTCCCACAATGAAAACTACTCATA


gi|90261195|gb|DY816712.1|DY816712 CTOX5324.b1_H12.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX5324, mRNA sequenc 

TCATTTTGGGACGGAGGGAGT
|| ||||||||||.||.||.|
AGAAAAACCCTGCTTCTCTTA

EST sequence (targeted fragment marked with yellow):
CCAACACAACGATGATGAACAGTATGTCTGGGAGTCTCAAGCTGGAGGGTCATTCACAGTCACCCGTGATACCTCCGGTGAAGTTCTTGGAAGGGGTACCAAAATGACCCTTTACCTAAAAGAAGACCAACTTGAATACCTTGAAGAACGCAGACTCAAAGATCTGATCAAGAAACACTCCGAGTTCATCAGCTACCCAATCTCTCTATGGGTCGAGAAAACCACCGAGAAAGAAATCTCTGATGATGAAGATGAAGAAGAGAAGAAGGACGAAGAGGGTAAGGTCGAAGAAGTCGATGAAGAGAAAGAGAAGGAAGAGAAGAAAAAGAAGACCATCAAGGAGGTGTCTCACGAATGGTCATTGGTCAACAAACAGAAGCCAATCTGGATGAGGAAGCCAGAAGAGATCACCAAAGAAGAATACGCTGCTTTCTACAAAAGCTTAACCAATGACTGGGAAGAGCATTTGAATGTCAAGCATTTCTCAGTTGAAGGTCAACTGGAATTCAAAGCCATTCTCTTCGTCCCAAAAAGAGCACCATTCGATCTCTTTGACACCAAAAAGAAGCCAAACAACATCAAGCTGTATGTCCGCCGTGTCTTCATCATGGACAACTGTGAAGAACTCATTCCAGAGTACTTAAGCTTCGTGAAAGGAATCGTCGATTCCGAAGATCTCCCTCTTAACATCTCCCGAGAAATGCTCCAGCAAAACAAGATCCTCANAGTCATCCGCAAGAACTTGGTCAAGAAATGTGTCGAACTTTTCCAAGAAATCGCGGAAAACAAAGAGGACTATGCCCAATTCTACGAAGCATTCTCCCAGAATCTCAAACTCGGAATCCA