| mature miRNA: TGACAGAAGAGAGTGAGCATA species: Taraxacum officinale database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90320491|gb|DY829858.1|DY829858 CTOY5477.b1_J01.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY5477, mRNA sequenc TGACAGAAGAGAGTGAGCATA EST sequence (targeted fragment marked with yellow): TGGATGTGAAATAAGGGTTGTTTTATTCCATCACGTTTAATGTTGCTAGAACTTGTGCACAAGAGGAGAAGTTGAATGTTTCGGTCTCACCAAACTCGGAGAAAAATGACTGGGGGATTTTACCGATGCAGACGATGTATAGCAGTAACGGTTGGGATACTTACTCATGGGGGTTTTTGGCTGAGTCTAATAAGATCGAGATTGTTATTCATAACCCACTTAGTGTTGAAAAAGACCCTGCATGTGGTCCCCTTATCGATTCGGTCGCGCTAAAGGCCTTGTTCCCTCCTAGAAGAACCAACACTAATATGTTGAAAAATGGAGATTTCGAGGAAGGTCCATTTGTGTTACCTAAAACAGACGTCGGTGGTGTTTTAATCCCTCCAAATATCGAAGATGACCATTCGCCACTTCCCGGTTGGATGATTGAATCCTTAAAAGCCGTAAAATATCTAGACTCTGAACACTTTGCCATCCCAAAGGGCAAACGAGCAGTAGAATTAATAGCTGGAAAAGAGAGCGCAATTGCCCAGGTAGTCAAGACTGTCCCAGGCAAAGTATACGCACTCTCTTTTGTTGTTGGNGATGCCAACAACGAGTGTGCGGGTTCAATGATTGTAGAGGCGTTTGCAGGTAAAAATACCCTTAGGGTACCCTATGAGTCGAAAGGCAAGGGGTGGTATAAACAGGCGGTTCTTAAAATTAGGGCAGTGACTACACGTACCAGAGTCAGGTTTTTGAGTACGTTTTATCAGATGAAGACTGACGGGGCCTCTCGGTGGCCCTAATATCGATGATGTTAGATTGATTGGCGCCCGAAATGCTAAACATGCTTGAT | |||||||||
gi|90325657|gb|DY833163.1|DY833163 CTOY9086.b1_K16.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY9086, mRNA sequenc TGACAGAAGAGAGTGAGCATA EST sequence (targeted fragment marked with yellow): CATCGATAAAAACAAAAGTGGATGTGAAAAAAGGGTTGTTTTATTCCATCACGTTTAATGTTGCTAGAACTTGTGCACAAGAGGAGAAGTTGAATGTTTCGGTCTCACCAAACTCGGAGAAAAATGACTGGGGGATTTTACCGATGCAGACGATGTATAGCAGTAACGGTTGGGATACTTACTCATGGGGGTTTTTGGCTGAGTCTAATAAGATCGAGATTGTTATTCATAACCCACTTAGTGTTGAAAAAGACCCTGCATGTGGTCCCCTTATCGATTCGGTCGCGCTAAAGGCCTTGTTCCCTCCTAGAAGAACCAACACTAATATGTTGTTAAATGGAGATTTCGAGGAAGGTCCATTTGTGTTACCTAAAACAGACGTCGGTGGTGTTTTAATCCCTCCAAATATCGAAGATGACCATTCGCCACTTCCCGGTTGGATGATTGAATCCTTAAAAGCCGTAAAATATCTAGACTCTGAACACTTTGCCATCCCAAAGGGCAAACGAGCAGTAGAATTAATAGCTGGAAAAGAGAGCGCAATTGCCCAGGTAGTCAAGACTGTCCCAGGCAAAGTATACGCACTCTCTTTTGTTGTTGGGGATGCCAACAACGAGTGTGCGGGTTCAATGATTGTAGAGGCGTTTGCAGGTAAAAATACCCTTAGGGTACCCTATGAGTCGAAAGGCAAGGGTGGGTATAAACAGGCGGTTCTTAAATTTAGGGCAGTGACTACACGTACCAGAGTCAGGTTTTTGAGTACGTTTTATCAGATGAAGACTGACGGGTCTCTCTGTGGTCCTATTATCGATGATGTTAGAATGATTGGCGTCCGATATGCTAAACATGCTTGATTTGTTTTTAGTTCTTTTTGGGAATCGGGGAAAAAAGT | |||||||||
gi|90251149|gb|DY806666.1|DY806666 CTOX14824.b1_O10.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX14824, mRNA seque TGACAGAAGAGAGTGAGCATA EST sequence (targeted fragment marked with yellow): TTGTCGGCTGCCGATTTCATGACTCAGGCCGAAGCTGGGCTTATGACCGTTGTCGCCCGGAGTGCACACGCCTGTATATGTCGACTAACGGGTTATAGCTTTGATAGCGCACGTCCAGTCTCTTGTGATTCCCATTGTTGCTACGGTCCCCGCCAAGGCTCAAGCTATTTTCCCTGTCCCAACACCGACCGCGCTTATCAGCAATGTAGTCGATTTCATGAGCTTTCAGAATTCGATGATGCGAAGAGAAGTTGTAGGAGACGTTTAGCAGGGCACAACGAAAGGCGAAGGAAGAACTCAATGGAGTTCAAAGGCACCGGGAAAGAACTTGTTTGTGTGCAAAACAACGATAGGAAGTTTCAAATGGTTATACAAGACAACCAAACTTATAAACATTTGCAAACTAGATGAATATCCAATTATCAAGGTACAAACTATGCTCTCTCTCTTCTGTCACTTCTAGTACTTATAATTGTAGTAATTTAATTAGTATGTCACACATTGTTGTTAAATGTTTTTATGTTGCTTAACCAATGTTGTAATTCAATAATAATGGGTTGTATACTATTCTGGAATGTTGGAAAATTAATTGACCAATGACACATCATGT | |||||||||
gi|90261515|gb|DY817032.1|DY817032 CTOX5685.b1_J06.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX5685, mRNA sequenc TGACAGAAGAGAGTGAGCATA EST sequence (targeted fragment marked with yellow): GATGCAGACAATGTATAGCAGTAACGGTTGGGATACTTACTCATGGGGATTTTTGGCCGAGGCTAATAAAATTGAGATTGTTATTCATAACCCACTTAGTGTTGAAAAAGACCCTGCTTGTGGTCCCCTTATCGATTCGGTCGCGCTAAAGGCCTTGTTCCCCCCTAGAAGAACCAACACTAATATGTTGAAAAATGGAGATTTTGAGGAAGGTCCATTTGTGTTACCTAAAACAGACGTCGGTGGTGTTTTAATCCCTCCAAATATCGAAGATGACCATTCGCCACTCCCTGGTTGGATGATTGAATCCTTAAAAGCCGTAAAATATCTAGACTCTGAACACTTTGCCATCCCAAAGGGCAAACGAGCAGTAGAATTAATAGCTGGAAAAGAGAGCGCAATTGCCCAGGTAGTCAAGACTGTCCCAGGCAAAGTATACGCACTCTCTTTTGTTGTTGGGGATGCCAACAACGAGTGTGCAGGTTCAATGATTGTAGAGGTGTTTGCAGGTAAAAACACGCTTAGAGTGCCCTATGAGTCAAAAGGCAAGGGTGGATATAAACAGGCGGTTCTTAAATTTAGGGCAGTGACTGCACGTACCAGAGTCAGGTTTTTGAGTACGTTTTATCAGATGAAGACTGACGGGTCTCTCTGTGGTCCTATTATCGATGATGTTAGATTGATTGGCGTCCGATATGCTAAACATGCTAAACATGCTTGATTTGTTTTAGTTCTTTTGGGGAATCGGGGAAAAGAGTGGTGCGGGGATGTTTGATGGTCGCCTATGATGTTTATTTAGCATGTTGTGGTATTATAGTAATGTAATGTCATTTCT | |||||||||
gi|90254487|gb|DY810004.1|DY810004 CTOX18585.b2_B15.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX18585, mRNA seque TGACAGAAGAGAGTGAGCATA EST sequence (targeted fragment marked with yellow): TGGCCCTTCTTTCACCATTTTTTCGTCTTAGTAACTAACTACTTTCGGAACCCTCTAGAACCCTTTTACATTTTACAGCCACCTGTCTATAAAAGCCTCAAAGTCTCCATTTTCCCCATACGCTCAATCTCTTCTCTCGAATTCGCGAATTTTTAAGCTTGTTGATTAGTTTGCGTTGTAGCAGCGAGATTTGTTTGATTGCGATATTGCACAATGGAGGATGATTTTGATTTTCCCGCAGCTGGAGGTATGAACGATGAAATGATGGATGATATGCCGTATGATGCTCCGGATACGTTGAAGGTTGGGGAAGAAAAGGAGATCGGTACTCAAGGTTTGAAGAAGAAACTTCTTAAGGAAGGTGAAAGCTGGGAGACTCCTGACAATGGCGACGAGGTCGAAGTAAATTACACTGGAACCTTGCTTGACGGAACTCAGTTCGACTCCAGTCGTGATAGGGGAACTCCGTTCAAGTTCACTCTCGGTCAAGGTCAAGTAATCAAGGGATGGGATCAAGGAATCAAAACGATGAAAAAGGGTGAGAATGCGCTCTTCACCATTCCTGCTGAACTTGCATATGGCGCTTCTGGTTCACCTCCAACTATTCCCCCAAACGCCACTCTACAATTCGACGTGCAACTACTATCCTGGGTTAGTGTCAAAGACATATGCAAGGATGGTGGAATCTTCAAGAAGATTGTCAAAAAAGGAGAGAAGTGGGAGAACCCCAAGGACCTCGATGAAGTTTTAGTGAATTATGAAGTTCGACTTGAGGATAACACTCTGGTTGCTAAATCAGATGGCATAGAGTTCGCTGTCCAAGATGGTCACGTCTGCCCTGCGCTATCAAAGGCTTTGAAGACAATGAAGAAAGGAGAAAAAACCCTTCTTACAGTTAAACCTCAATATGGATTTGGGG | |||||||||
gi|90316517|gb|DY825907.1|DY825907 CTOY17425.b1_B13.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY17425, mRNA seque TGACAGAAGAGAGTGAGCATA EST sequence (targeted fragment marked with yellow): TAATGGTATGGATGCAACTCCAAATTCCATACTATCCGGAGATGTTAGGCATGCTTTCTCTCTTCTGTCAACAAGTTCTTGGCCTTCCAACTGGCCAGAAGAACAACCTTCATCCTTCGATCAATTTGGGCAAATAAACAGTATCAGCTTATCACAGCCAGGAAGGCCTCAGGAACTTCAAAATACTACGAACCCTACTCACCTCCAAAACTTTCATTCATATAAATCACCTCGTGAACTTGAACGATTTTACTCAAATTGAAATTAATCGACCGGTGTTCAAATCTGTCCAAATCTTGGTTAAATAATTTCTCCAAGTTCGTACCACCAAGTAGCACTTCTGCAATCAGTCATACATAGAATCGATAACCCTTCTTAGTTCAGGTCGATAATTTGAGTAGTACGAAAGTCAATAGTCAATATTCTGAACACCATTTATCACTCGTTCAATGAAACTCCACTTCATGGGCCTAATTAACACAAGATCAGTCGCTTTCAAAGGCATCGAGGATCCAAATGATCTCACGATGTGCATTAATCACGATTCATGGAAGAATGGAAAGGCTAAAAGGCTTCTATTCCGTCATTGAAGTTGAATTTGAAGAAAATAAATTCAAGAACATTTGTGTCGGCAAAGTTTAGTTCTTTTTATTGATTGGAAGCAAGTTTTGCCGTTGGATCATTTCTTTGAATCAGTGGTTTGCAGGTAACTTAATTATTCTCCTCTAGATGTTGATTGGTAGTTGGATTTCTCTTCCAAAATGGAATTAATAGTATACTTTTTTGGAGATGAGTTGAAATAGGAAGTTAACTTCTAGTATATGGTTTAGTTAATTTGCTTGATATTAATATGTTGTGGTCTTGCTTTGCTTTGTCTATCGATTTTTGAGCTTAATTATTTTGTAGTGAGATTTTTAC | |||||||||