| mature miRNA: TGTGTTCTCAGGTCGCCCCT species: Taraxacum officinale database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90333835|gb|DY835159.1|DY835159 CTOZ1900.b1_H20.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ1900, mRNA sequenc TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): CGACTACTCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGCCATTTCTTATTCCCACTAAAAAAA | |||||||||
gi|90341453|gb|DY839091.1|DY839091 CTOZ5705.b1_B12.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ5705, mRNA sequenc TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GTGTCCATAAGTCCATCAAACTACGTGGCACATGAACATCAACTTTATTGTAAGCATCATGCGGCTCAGCTTTTCATGGCGAAGGGAAATTTTAGCCAATTTGACAAACAACATGAACCAGATAACAATAATGGGGTGACTGAGAACACAACCGAAGTTTGATGATGATTTTGAGGTTAATTTCAGGATTTGGTTTTTTAATGTTAAACTATGTTTTTTGAGCAGAGTTTTGTGGGGTTTTTTTATGTTACGTTGTTCAAAGAAAGATTATTTACGAGATTTGACTTCGTGTGTGTTGAGTGAATAACTTGTTATTATTGAATAAACGTGTTTTTGGGTTGTAACGATGTGTGGTTCTTTTGATTATTTGAGGTTTTGGATTGTTTTTTTCTT | |||||||||
gi|90330417|gb|DY834151.1|DY834151 CTOZ10090.b1_D03.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ10090, mRNA seque TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): CTCTCCATTCTTACGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGCCATTTCTTATTCCCACT | |||||||||
gi|90330507|gb|DY834241.1|DY834241 CTOZ10180.b1_G02.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ10180, mRNA seque TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCGCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAAAAAGATGCATAAAAAAAAAAAAAAAAACATGTC | |||||||||
gi|90317469|gb|DY826836.1|DY826836 CTOY2455.b1_N13.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY2455, mRNA sequenc TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GGGGCGGCCTGCGAACACTTTTGTTCTCCGGACAAAGACTTTCACTCTTACCAAAGAATCCCACCAAAATTCCATTTTCTCACTGCTTATCTACTTGATCACACATACGCACTCGATTCCCAAATTCCGCCATGGATGATGACAGCGATCAAAGCTCCGAAGCAACTCAACTGGAAGGACATTCAACAGCGGAGGATACGACGATGCACCCTCATTACGATGACGACGACGCTACTCCATTACATACTTCTCGTACGTCACCCGAGGAAGATTCAACTACTTCTCAACCTTTAACCCTAGTAGTATCCGATTTATCAGACGTACCGGTAAAATACGAGATGCAACGCGATGAGTTGGAGCGCTTGAAGAATCAGCTTCAAGGGAGTCACCAAGAAGCCCTAGCAACTGTCATAGCTCAGGCCGCTCGATCTCAGATTTCAAGTCTTAAATGTTCAAATCCACAAGCACAAATTCACTCACAGAAGAACACCACTGATATTCCTAAATCATCGTCTCCTTCACACCATGTTAAGATACCTACGGATGGTTATAACTGGAGAAAATACGGTCAGAAGCAAGTCAAGAGTCCTCAAGGTTCAAGAAGCTATTACAAATGCACGTCCACTGAATGCGATGCTAAAAAGATAGAATCATGCGATCAAAACAATTCTATTACAAAAGTAGTTTACAAAGGCCACCACAAACACGATCCACCTAAAAAAGTGTTTTCTGGAGGCAAGATTTTATCATCTCCAATATCACTAAAAAGAAAATCGATCTCAACACCTCCATTAAAGGAACATCGACTATGTGACCAGAGAGTGAAAAATTCTGTTCCAAAAAAGCCAAAGTATATTGTACATGCAGCTGATGACGTTGGAATATCAGCAGATGGGTATAGATGGAGAAAATATGGGCAGAAAATGGTGAAGGGAAATCGTCACCCAGGAACTACT | |||||||||
gi|90264578|gb|DY820095.1|DY820095 CTOY12055.b1_N13.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY12055, mRNA seque TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): CGGGATCGACACTCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTTCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGCCATTTCTTATTCCCA | |||||||||
gi|90259149|gb|DY814666.1|DY814666 CTOX3085.b1_I03.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX3085, mRNA sequenc TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGGGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGA | |||||||||