miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGTGTTCTCAGGTCGCCCCTG
species: Taraxacum officinale
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90330417|gb|DY834151.1|DY834151 CTOZ10090.b1_D03.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ10090, mRNA seque 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||.| .||||||
ACACTAGAGTCTATTGGGGAC

EST sequence (targeted fragment marked with yellow):
CTCTCCATTCTTACGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGCCATTTCTTATTCCCACT


gi|90264578|gb|DY820095.1|DY820095 CTOY12055.b1_N13.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOY12055, mRNA seque 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||.| .||||||
ACACTAGAGTCTATTGGGGAC

EST sequence (targeted fragment marked with yellow):
CGGGATCGACACTCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTTCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGCCATTTCTTATTCCCA


gi|90330507|gb|DY834241.1|DY834241 CTOZ10180.b1_G02.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ10180, mRNA seque 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||.| .||||||
ACACTAGAGTCTATTGGGGAC

EST sequence (targeted fragment marked with yellow):
TCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCGCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAAAAAGATGCATAAAAAAAAAAAAAAAAACATGTC


gi|90333835|gb|DY835159.1|DY835159 CTOZ1900.b1_H20.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOZ1900, mRNA sequenc 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||.| .||||||
ACACTAGAGTCTATTGGGGAC

EST sequence (targeted fragment marked with yellow):
CGACTACTCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGCCATTTCTTATTCCCACTAAAAAAA


gi|90259149|gb|DY814666.1|DY814666 CTOX3085.b1_I03.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX3085, mRNA sequenc 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||.| .||||||
ACACTAGAGTCTATTGGGGAC

EST sequence (targeted fragment marked with yellow):
TCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGATCACATATAAAAATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGTGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGGGGTTCGCCATGCTGGCGATCTTGGAAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACTATTATCGATAAACAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTAAGCAAAACCACTGGAAATGCTGGTGGAAGGGTTGCATGCGGTATCATTGGATTACAGGGTTGATTTGTCTACTGCTCATCTGTATGCCAGGGAAATATTGAGGATTACTTTCTTGAGAACATAGATACATTTACATGTTTACATATTTCCCCTAAATATGTGATTGTGGTAGTATTGCGTTTTTTTAATAAAGTATTCCCTGTGCTATTTGAATACTTGGATATCTTTTGAGTGTGTTTTTGAATTGAGACATGTTTTATATGA