mature miRNA: TCCGGAGGGATGCCTTCCTTG species: Thellungiella halophila database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|114214103|gb|EC599465.1|EC599465 D05.B0305311.700 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): CCACCAAACCCAAAAAAAGAGATCCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCCGTGGTGGTATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACAATTACCCTCGAGGTTGAAAGCTCTGACACCATTGACAACGTCAAGGCCAAGATTCAGGATAAGGAAGGCATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAGTCGACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGCATGCAGATATTCGTGAAGACCCTTACAGGCAAGACGATTACTCTTGAAGTCGAGAGCTCCGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCGGACCAGCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCGGATTACAACATTCAGAAGGAATCGACCCTTCACTTGGTTCTGCGTCTGC | |||||||||
gi|114213827|gb|EC599161.1|EC599161 BB988-269.AD-F Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, mR TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): TCCCCCGGGCTGCAGGAATTCGGCACGAGGGACGAACTAAAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAGCAGCGATTGATCTTCGCCG | |||||||||
gi|209479217|gb|BY805497.1|BY805497 BY805497 RTFL1 Thellungiella halophila cDNA clone RTFL01-08-H12 5' similar to AF542545.1 Nic TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): GGCAATTCGATTTTCTAAATCAAAAACACTTATCTCAATTCTCCAACGCGACTTACGATCAAGATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCTGACACCATCGATAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCACTTGGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTTTGGAGGTCGAGAGTTCTGACACCATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGGTTGATCTTCGCCGGANAGCAGCTCGAAGATGGCCGTACTCTTGCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTAGTGCTCAGGCT | |||||||||
gi|209470456|gb|BY832714.1|BY832714 BY832714 RTFL1 Thellungiella halophila cDNA clone RTFL01-48-M15 5' similar to NM_102190.2 Ar TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): ATGGAGCAAAAACAGAGAGAAGAAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAATCATCGGATACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCGGATCAGCAGCGACTGATCTTCGCCGGAAAGCAATTGGAAGACGGGAGGACACTGGCGGATTACAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGAGCGAAGAAGAGGAAGAAGAAGACGTACACGAAGCCGAAGAAGATCAAGCACAAGCACAAGAAAGTGAAGCTCGCGGTTCTGCAGTTTTACAAGGTGGATGGGACCGGTAAGGTTCAGAGGCTGAGGAAAGAGTGTCCTTCGGTTAGCTGTGGACCGGGGACTTTCATGGCGAGTCATTTCGATAGGCATTACTGTGGAAAGTGTGGAACCACTTATGTCTTCAAGAAGCCTGATGAAGAGTGATGATGATGATGATTCTTAAGTCGTCATTTTTCTCCTCTTTTTTTATACTTGCTGTTTTGAACTATCAGTGATTTTATTATGGAACTACATTGGTATGTTGGATTCTAAATTTTTGA | |||||||||
gi|209453304|gb|BY818322.1|BY818322 BY818322 RTFL1 Thellungiella halophila cDNA clone RTFL01-27-I14 5' similar to NM_122069.2 Ar TCCGGAGGGATGCCTTCCTTG EST sequence (targeted fragment marked with yellow): TTAGGTGACACTATAGAACCAGAGTTCCGTCGCAGCCGGGATTTGGGTCGCAGTTCTTGTTTGTGGATTGCTGTGATCGTCACTTGACAATGCATATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAATGTCAAGGCTAAGATCCAAGATAACGAAGGCATCCCTCCTGACCAGCACAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGA | |||||||||
gi|114213994|gb|EC599328.1|EC599328 C02_XQ-plate-1 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, mR TCCGGAGGGATGCCTTCCTTG |