| mature miRNA: CATTGGACTGAAGGGAGCTCC species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|212644715|gb|CU528151.1|CU528151 CU528151 WOODS_KZ0ACAA Theobroma cacao cDNA clone KZ0ACAA5YD12FM1, mRNA sequence CATTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): CGGGGAGAGTTTTGAGGAGAAAATAAGTAGAGAGGGGGGCTAAGGAGCTCCTTTCAGTCCAATACAGGGGGCAGAGATGTGGATAGAGCTGCCATCTCATGCATTGGGTTATGCTTAGTGTTTTATTGGAAAGATTTGCCAATATTCATCACCCAAAAAAGAGGGAGAAGATTATGAATGTTGAGTTTAGCCCGATGCATGGTGTGGGAGCAACTCCTTCCACATACTTTGCCCACCCATTGGACTGAAGGGAGCTCCTGGTTTCATCTCCATGCACTGCACCTGTTTAGGAGAGCAAATATTCCCAAAATCCTGTTTTGATCTTGTCTTCGAACTCATCTGCCCTTTTTTTTTTTTCTTTTCTCAATCCCGGCTTAACTTGTAACTTTTTTTCAACTCTTTTCAGGTTTTTATCCAGCTTCGCAGTGACTAAAATGGAGATCAAAGTGCTGTGGAAGTTGGCAGGTTGCAGCTCAGAGAGTAAACTTGACTGAGAGGATTGCCGTGACATTCCAAGAACAAAGCCTCAAGATTAAGAAGTTCCCACTCTTTCCACCATCTTCAGTTGTCCTGCACTGGGCAAAACTTGCAGATGCTGCAAGCTGACCAT | |||||||||
gi|212141856|gb|CU500996.1|CU500996 CU500996 LEAVPAGU_KZ0ACQ Theobroma cacao cDNA clone KZ0ACQ8YF23FM1, mRNA sequence CATTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): CGGGTCTGATCCCGGTGGCAACAACACAGCCGGGGCCAGGGGGTGACTACAACCTTAACTTCACAATCTCTTCCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTTTTCGCCTCACCTCCTCCAGAGGTTTTCTTCTATAGACGGATCATCACCCTTCTACATTGGTACACCACCAGTGGAGAATCATCACCACCATCAGTTCCCAGCTGGATTAGATGGCCGCTTGCAGCTCTGCTATGGGGATGGAAGCAGGAGCTCAGACCAGAAGGGAAAAGGAAAGAACTAATCAGTTTCCTGAAAACGTCTCCTCGAGGCACCATCTTTTCTCTGGAAAAGCAAAGATGGAGGAAGCAGTGGCAAGCTGTGAGCGAAAGCATTCCTTCCTTCCTTGCATTGGGTGATACCTTTGTTATTGTGCTTCTAAAATTGTTAGTGTTTCTGGTTTATCCGT | |||||||||