| mature miRNA: GACCATTTTCGTTGCTCTCTT species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|223631623|gb|ES441055.1|ES441055 TSH_EST01273 Theobroma cacao-Moniliophthora perniciosa incompatible interaction library Theo GACCATTTTCGTTGCTCTCTT EST sequence (targeted fragment marked with yellow): ATTACTGAGAGGAGAAATCAGCAGAGAAAAGAAAAAGAAAAAGAGCAGCGAAAATGGTCCTCCTAGAGAAGCTTTGGGATGATGTAGTGGCGGGCCTCAACCAGAACGTGGTCTTGGCCGGCTTAGAAAGATCACCACCCAGCCCTTGACCATCAAAGATGAAGGAGAAGGGAGCAAGTATCAGAGGTCGATGTCGATGCCGGCGACTCCTGGGGAC | |||||||||
gi|212322233|gb|CU532072.1|CU532072 CU532072 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK22YP01FM1, mRNA sequence GACCATTTTCGTTGCTCTCTT EST sequence (targeted fragment marked with yellow): CGGGGGACGACTTTAAGGGCAAAGATTCTGGAAAAACTACAAAAGTTGCTTCCTGCCGCAGTTATGATTCCTGAAAAAAGGTTAGAACATCTTGTTGAAAGGGCACTTGATGTTCAACGAGGGGCTTGTGCGTTCCATAATGCCTCAGATAGTGATCTTTCTTTGTACTCAGATCATTATTGTGGGAAAAGTCAGATTCCTTCCCAGACATTGCAGATACTACAAGCGCACAATGATGAAGTTTGGTTTTTGCAATTCTCACACAATGGCAAATATTTGGCCTCATCATCCAAGGATCAGTTGGCAATTATATGGGAGTTTAACGAAAATGGTCAAGGATCTCTGAA | |||||||||
gi|213164078|gb|CU630056.1|CU630056 CU630056 COTYLEI_KZ0ABB Theobroma cacao cDNA clone KZ0ABB3YC18FM1, mRNA sequence GACCATTTTCGTTGCTCTCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTATAAGGAGACCAAAATAAATAACATATTCCATAAAATGAGTTTCACATGCAAAGTAAACAGGATTATCCATTGCACCTAAACTAGAAATCTAGGATTTAAAAGTATGCACTACAACATAAGGTCAGACTCCAACTCTAATGTAATTGCAGAAACAGTTGCCATTAAAGACATGCAAATAACAGGACTTCCAACTGACTTCTGCCACAAAGACAAAGGTCTTCCTCCAACGCTCCTCAAGATCCTAATCATTCCTCTGCTGGTGGTGATTGACTGCGATATCTCTCATTGACGGGGCTTTCAGCTCCACCACCATAGGGACTGTCCCTTCCTTCAGGCATAGAACTTGGGCTGGGACCACGACCATTTTCAGGGCTAGCTCTATCTCTTTCATATGGGCTATGGCTGGGTCCACGACCATTATCAGAGCTAGGCCTTTCTCTTCTATATGGACTATGACTAGGGCTACGATCATTCTCAGCACTATGCTTCTCCCTCCTATAGGGACTATTGCTGGGACCTCGACCATTCTCGGGGCTAGCCCTCTCTTTACTATAAGGGCTTCGACTGGAGCCACGAAAATGGTCAGCACCAGCCCTCTCTCTTCGGTAAGGACTACGGCTAGTGCCCCGGCCATATTCAGGGCTAGCTCTATCTCTCTT | |||||||||