| mature miRNA: GTATAGCATCATGAGCAATCA species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|215521264|gb|CU601604.1|CU601604 CU601604 SEEDMAI_KZ0AAG Theobroma cacao cDNA clone KZ0AAG7YB11FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGGAGCGGAAAGAAATCTCACTTGAAAAGCAACAGATTGACTCAAGTGGGACCTTTTAAAGGATGCATGATAGCTGCAGATAGTGGTACCATCAGAAATTGTTATATAAGTTCAAATGGTATTCATTCAGGAATTCTTAATGGAGCTAAAGATGGAAATCTTAACCTTCCTGAAGGAAATGCTGTTCAAACTAGTTCACCAGTGTTCAGATCCCAATGCAGGTTGTTGGATGCTCCGCCTGAAACTCTTGGTGCTTCTGCTTTAGCACTGCACTATGCAAATGTTATCATTGTTATCGAGAAGTTAGCAGTATCTCCTCACTTGATTGGTCATGATGCTAGAGATGATCTTTACAACATGTTACCTGCAAGTGTAAGAGCTGCATTGAGGGTAAGGCTAAAACCATATACAAAGAGCTTAGCTTCATCAGTTTATGATACAGAACTTGCAGGAGAGTGGACTGAGGCAATGTCTGCCATATTAGAGTGGTTGGCACCGCTAGCTCATAATATGATAAGATGGCAATCTGAGCGGAGTTTCGAACAGCAGAACTTTCTTTCGAGGACTAATGTGCTTCTGGTGCAAACTCTCTACTTTGCAAATCGAGAAAAGACAGAAGCAGCTATCACTGAGATTCTTGTTGGTCTGAATTATGTCTGGAGACTCGGTAGAGAACTCAATGCAAAGGCTCTGCAGGAATGT | |||||||||
gi|212338625|gb|CU615359.1|CU615359 CU615359 TPFERMI_A_KZ0AAN Theobroma cacao cDNA clone KZ0AAN3YB13FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGATATTTTATATTAAGGAATTAGTTGATAGTCAATAAATGATTACAATGGCGATCAGTGGAATCTTATCAAAAGACTAGAACCAATAGCACACTGAGATATCATATTAACCATGTTTAATTATAGAAACCATTAACTTATTTTTTTGGTATATTACATTTAACTTCGATCAAATAAAAAATAAACAAAAAACCAAGAAACACCATTCAATGAGTTGGTCATCAAAGTGTTCTTTTGCATTTATTTAGTTTTGTTCTTTGTCTTGTTTCGATGTTAATAGGTGTTTGCTATTCTTATGAAAATATACAAAGAATGTGAAAGCATGCATTACCAAATAGAAGACTGCTTGATTAACCATGATGTTATACAATAAATGAACTTGAATAAAGTCAAGCTAAAAGTGTGTGTGTGTGAATTGACTATACAGATTCATTTACTGGAATATGAAAATAGCGTACACGAAATAAATAAGTGTGTGTGTAATCATGTACAATCTCATAAACATCATGTAGATTTCTAATCAAAACCAAGCAGAAGTCTCAACTCAAATAACTGTATTCAAATTTTTCAGTTACCATGAAGGAGGAGAACACTTCCTCGTATCAAACATCTC | |||||||||
gi|213643831|gb|CU625256.1|CU625256 CU625256 LEAVES_KZ0ABE Theobroma cacao cDNA clone KZ0ABE4YD02FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGGGTCATGGCTACTGCCATTAACCCTTTACTTCCTCTTTCTCCTTCACTCAAACACACCATTATTCCTTCCTCAACTCCATGGATTTCATGCAAACCCATCTCGGGTTCAGTGGCTACTTTAACCATTACTCGCTTCAGTCGACAAAGAGGACAGGTTGCAGTCTCAGTCTACTTCAATCCTTCCGGAAATTTTGACCTCTCCTTGTATGGGGATGAGGATGATTCACCCCAGGTAGAGCCTCCATTGCCTCCAAGTGAAGGCCGATTTGATGTAGTCATTGATAATGATGCTATACGCCGGCTTGATTTATCCCCATTTCAGATTGCTACTGGAATTACTTCACCTTCATCAGCCGAAGCAAAAGAGTTTCTTGAAAGAACAATTGGATTTACTATTAATTATACAAGAGATGATCCACATGATCCACGAGAACTGTCAGAATTTCCTGATATAAGGTTATGGTTTGTAAGACTTGATGCTACTTATCCCTGGCTCCCTGTCTTGTTGGACTGGCGAGCTGGAGAATTAGCTCGTTATGCAGCCATGTTAGTCCCGCACCAGATGAGCATGAAAATGGGAGTTGTGTTTAATCCA | |||||||||
gi|211996554|gb|CU491601.1|CU491601 CU491601 DROUGHTRS_KZ0ACAE Theobroma cacao cDNA clone KZ0ACAE8YE18FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGGGCTTCCTCCCTTAAGTAGAAAAAAACGAACCGTCGCAGCCCAGTCGCCGCCGTCCGATCACCGTGATCTGAATCACTCTTTCTCTTCTGTGACAATGGCGACTGTCATGCAAAAAATCAAAGACATCGAAGATGAGATGGCAAGGACTCAAAAGAACAAAGCAACAGCTCATCATCTCGGTTTGCTGAAGGCTAAACTTGCAAAGCTACGAAGAGAACTCCTTACACCCTCATCAAAAGGGGGAGGTGCTGCGGGTGAAGGTTTTGATGTTACAAAAAGTGGAGATGCAAGAGTTGGTCTAGTAGGTTTCCCTTCAGTGGGGAAATCTACTCTTCTAAACAAATTGACAGGGACATTTTCAGAGGTTGCTTCCTACGAATTTACTACATTAACTTGTATCCCAGGTGTGATCGTGTATAGAGGGGCTAAAATTCAGTTGTTGGATCTCCCTGGTATTATCGAGGGTGCTAAAGATGGAAAGGGTAGAGGAAGACAGGTCATCAGCACTGCTAGGACATGCAATTGTATATTGATTGTTCTTGATGCGATAAAGCCAATAACTCACAAGCGTCTTATTGAGAAAGAGCTTGAAGGATTTGGCATAAGGTTGAACAAGGAACCGCCTAATTTGACATT | |||||||||
gi|218178465|gb|CU615851.1|CU615851 CU615851 TPFERMI_A_KZ0AAN Theobroma cacao cDNA clone KZ0AAN5YH07FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGGTATTTTATATTAAGGAATTAGTTGATAGTCAATAGATGATTACAATGGCGATCAGTGGAATCTTATCAAAAGACTAGAACCAATAGCACACTGAGATATCATATTAACCATGTTTAATTATAGAAACCATTAACTTATTTTTTGGTATATTACATTTAACTTCGATCAAATAAAAAATAAACAAAAAACTAAGAAACACCATTCAATGAGTTGGTCATCAAAGTGTTCTTTTGCATTTATTTAGTTTTGTTCTTTGTCTTGTTTCGATGTTAATAGGTGTTTGCTATTCTTATGAAAATATACAAAGAATGTGAAAGCATGCATTACCAAATAGAAGACTGCTTGATTAACCATGATGTTATACAGTAAATGAACTTGAATAAAGTCAACTTAAAAGTGTGTGTGAATTGACTATACAGATTCATTTACTGGAATATGAAAATAGCGTACACGAAATAAATAAGTGTGTGTGTAATCATGTACAATCTCATAAACATCATGTAGATTTCTAATCAAAACCAAGCAGAAGTCTCAACTCAAATAACTGTATTCAAATTTTTTCAGTTACAATGAAGGAGGAGAACACTTCATCGTATCAAACATCTCATAGCAACAGTGCTGTGTTTTATTTTAAATCTGTTTCTGT | |||||||||
gi|212313679|gb|CU620290.1|CU620290 CU620290 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA3YN09FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTCTTTTTTTTTTTGGCCTTAAAACTTGATAATGTCATAAATATTATTTCAAATATTTTATGATTGTCATGATGCTTTATGCAAGTTATTCCACAAGCTCATCCTGCAATTTATAACATTAACAGAAGCCGGTTTAAATCAGATATAATCCACCCTATTATTGGATCTAATGACCCATGAGAAGAAAATTAAATTTCTTGCTCTAACAACAGTCTTGGCTCTCATTTAAGCAAGGCTGTTGTCTTACAAATAGGACACAGGTTCTTTAGCATTAGCCACTGTTTGATGCAGTTAGTGTGGAAGTCATGACCACAATCTAGTGTCCCAGTATCATCCCCATCAGCATATTCTTCCTGACAGATACCGCAGGGTTCCAACTCTTGTGGGGATTCTGTTGTAGTGGATGAATATTTCTGCTGTTTCATCAACCTCAGAATGGTTTCCTCACCCAGCCCAGTGCTCACATCT | |||||||||
gi|211988094|gb|CU515148.1|CU515148 CU515148 ROOTS_KZ0ABF Theobroma cacao cDNA clone KZ0ABF6YG07FM1, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGATTCAGGAATGCTGCTTTCAGTCAATGCAGCATTAAAATGATTAAATCATACTACTAAAGAACTGGATATACATGAAAGCAAATAGTGTAACAGCAGCTAATCATAATTTAAAGTTAAAGCTAAAAAAAATAACGATAAGCTTAAAATCCCAGTAAATTAAAAAGAGGTAGGTCTCTGAATCACCCAAGCTAGAGCTTAACACACAAACATCTACAAGTCCAAAAAAGATTGTATAGCATCATGAGCAATCAGCCTTAAACTTTTTAGCAAAATGACCGCTCATGATGTTATATCGTTTCATGAAGCTGCCCTTTAGTCCTCTTTTTTGTTACTTTTTTTTTTTTTTTTTGAAATCCTGGGCCGGAAAAAGCTGCTAACTGCCCTTCCCACAATTGTAAAAACCATTTTCTATCGGAAACCGGCGCCAAGGGCAGGAGCCCAATAATCCGCTCCCTTGTCA | |||||||||