| mature miRNA: TCGGACCAGGCTTCATTCCCC species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|212317334|gb|CU530930.1|CU530930 CU530930 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK12YD16FM1, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GATTTGATGAAGCTTCAAATCTTAAGTTGGGCTCTTTGTCTTCCACTAAGGCCTCCAAAAAAAATAAAAATGCAATTTAATGTACTTGTTTCCAAGACAAACATGAATTATTAGTGCCAAGAGGGCGAGATGATAGAGCCTCCTGCAAATCCAACAACTACCACCAGCAACAAGATGTAGCAAAATCCTTAATTTATATGTAGGATAGGAATTAGGAAACTAGTCAGCTTACTATTATTCTTCCTTTTGATTTCCCCGAGAGACCTGTAACTAACTGTTAAACTAATCATGCTACTGGTGATCGATGAAATCCAAGAATAAAACCACTGTACTTCCATGTAAAAATATTAAAAGTGGAAGCAGTAATTAAGGGGAATGAAGCCTGGTCCAAGAGCACAAATTAAACAGGGAATAAGACTATCTTTCGATTGATCTTGAAAGCTAATCAGTTTTTAGGCTCGAAACAGATCAAAATAGATGGAGAGTTGGGTGCTCTTGAACCAGACAACATTCCCCTCAACAAGAAAAGCTTCCCACCTGGAAACTATCTTCCTTGATCTTCCTTCTTCACTTTTCCGTTATTCTTTCCTTCAATACAACAATTCTTTTGCGGGTTTCGTGTGATATATTGTTGATGACGATGAACATAATCATTTGATTTTACGAGAGAAAGTAAAAGCGGTGAAAGAGAGAGATTGAGGAAGAACATGGGGGTCCCGAGGTCGTGGTCATTTCTGGAACCCAGCTGTTGGGTTGGGTTCAGCCCTGTTCTTTTTCTCTAACTTTTGGAACTCTAAATAATAAGCAAATCCTGTAAAAAACTGCCCAATCCCCGCGTACTCTG | |||||||||
gi|215790836|gb|CU544626.1|CU544626 CU544626 COSSHPPI_KZ0AA Theobroma cacao cDNA clone KZ0AA1YD22, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): CGCGGGGGTGGAAGAGGAAGTGGAGGAGGAAGCTTGGTCTGAGTTTTAAGGGCTTACGTCTCGAAACTGCTGAAACATTTTAATTATGTTTTGTCCTAGAAACTGGTTTTAATCGCATGTTTTCTAGTATGCTTCTCCCTTTCTTTGTGTTTTCTGAAGGTTGGGTTTGTAATGGATGATAATTCTGTTAATAAAAGTAACTAACTTCGAAAAAAAAAAAAAAAA | |||||||||
gi|215534289|gb|CU603518.1|CU603518 CU603518 SEFERMI_A_KZ0AAR Theobroma cacao cDNA clone KZ0AAR1YM23FM1, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCCCGGGACTTGTTCGCTATCGGTCTCTCCCCCGTATTTATCCTTGGACGGAATTAACCTCCCTATTGGGGGGGCATTCCCAAACAACCCAACCCGCCAACAGACCCTCGTGGGGGGACAGGGTCGGGGCAGGACGGGGCTCTCACCCTCCCCGGCGCCCCTTTCTTGGGGAGTGGGGCCCGGTCCGCCGCTGAGGAAGCTTCCCCAAACTAAAAATCGGGCGGGGGGGGGGCGCGATTCACAAGCTGGGTTCTTCCCGGTTCGCTCGC | |||||||||
gi|212164189|gb|CU519884.1|CU519884 CU519884 SEEDNAB_KZ0ABH Theobroma cacao cDNA clone KZ0ABH7YI12FM1, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCCCCCGCGGTACTTGTTCGCTATCGGTCTCCCGCCCGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCGGCATTCCCAAACAACCCGACTCGCCGACAGCGCCTCGGGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCCGGCGCCCCTTTCCAGGGGAATGGGGCCCGGTCCGC | |||||||||
gi|212313390|gb|CU620969.1|CU620969 CU620969 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA7YA20FM1, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): CGGGGAACGAGACTCTCTTCTTTGAGAAGTTTGTGCTGTCGATGATAAAGATGGGGCAATTGAGTGTGTTGACTGGAAAGAATGGGGAGGTTCGTGCCAATTGTTCAATAAGGAATCCGGATAACAAGTCGTATTTGGCGTCTGTGGTGGAAGAGGAAGTGGAGGAGGAAGCTTGGTCTGAGTTTTAAGGGCTTACGTCTCGAAACTGCTGAAACATTTTAATTATGTTTTGTCCTAGAAACTGGTTTTAATCGCATGTTTTCTAGTATGCTTCTCCCTTTCTTTGTGTTTTCTGAAGGTTGGGTTTGTAATGGATGATAATTCTGTTAATAAAAGTAACTAACTTCGTTGAAAACGAGTTTGCACAAAAAAAAAAAAAAA | |||||||||
gi|213645229|gb|CU569174.1|CU569174 CU569174 MIRIDUFS_KZ0ACAD Theobroma cacao cDNA clone KZ0ACAD7YA07FM1, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCCCCGCGGTACTGGTTCGCTATCGGTCTCGCGCCCGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGCCAACAGCGCCTCGGGGTGGGACAGGGACCGGGCACGAGGGGGCTCTCACCCTCCCCGGCGCCCGTTTCCAGGGGAGTGGGGCCCGGTCCGCCGCCGAGGAAGCTTCCCC | |||||||||
gi|213166938|gb|CU632605.1|CU632605 CU632605 COTYLEI_KZ0ABB Theobroma cacao cDNA clone KZ0ABB5YH07FM1, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): CGGGAACGCCGACGCCATTCTCGCCAGCCTCGCTACCAAAAATTTTGACCCCACTGATGTAGTAGCTCTCTCTGGTGGCCACACCATTGGCATCAGCCATTGCTCCTCTTTCACCAATAGGCTTTACCCTACTCAAGACCCTAACATGGACAAAACCTTTGCCAATAACCTCAAGGGGATTTGTCCAACAGCAAATTCCACAAACACCACCGTGTTAGATATAAGGAGCCCTGACAAATTCGATAACAAGTACTATGTTGATCTCATGAACCGCCAGGGTCTGTTCACCTCGGACCAAGACCTGTACACTGATAGCAGGACAAGGGCCATTGTCACTAGCTTTGCCGTGAACGAGACTCTCTTCTTTGAGAAGTTTGTGCTGTCGGTGATAAAGATGGGGCAATTGAGTGTGTTGACTGGAAAGAATGGGGAGGTTCGTGCCAATTGTTCAATAAGGAATCCGGATAACAAGTCGTATTTGGCGTCTGTGGTGGAAGAGGAAGTGGAGGAGGAAGCTTGGTCTGAATTTTAAGGGCTTACGTCTCGAAA | |||||||||