| mature miRNA: TGACAGAAGAGAGTGAGCAC species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|213637858|gb|CU575818.1|CU575818 CU575818 HYPO23I_KZ0AAP Theobroma cacao cDNA clone KZ0AAP4YL10FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTCTTGGCAAACTGTTAGTCCACATGAAATTATTTCATATCGTTGCATATCGACATGTGGGAAAGAAAAAGCCACGCGACAGAGGATGCAAAAAACACACAGTATTTACAAGCTCTCCGCTTACTTATGTCCAACAAGTATGCAAGATAACAGGTAAAACACACAAGATTTCATCATCATCTAGTAACCTCCCTGAATGTAAGCATTCAAACGGTCCAACTCCTCACGGTGCTCAATCACCACAGCACGAACAACATCTCCAATGGAAACCATGCCGACCATTCCCTTCTCATCAATCACTGGAATGTGTCGGATTCGGTTATCTGTCATCAATTGCATTGCTCGCAAAACTTTGGTCTCAGGTGTGACAGTAATGAGCTTGTTCTCTTCAGTCATGATGTCCCCAACCTTAGTTGACTTGGATGATCTTCCCTGTACTATTATTTTCCTAAGATAATCCGCAATTGATTCCTGCTCTCCAGGTTTTACAACCACCAGGGCACCGACATTGTGTTGAGTCATCGACTTCACAGCATTGTACACAGTGTCATCTGTAGTGCACCAAAGCCAGGAGCCATCTGCACCTTTACCTTTTGCTTTCAAGATGTCTGCAATAGTGGTGCTCTCAAAGCCGTGCTCTTCCATACGAGCAAATGAAA | |||||||||
gi|215520662|gb|CU585827.1|CU585827 CU585827 OVULEI_KZ0AAB Theobroma cacao cDNA clone KZ0AAB7YI05FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGCCGAGCAAGACGATAATGTTTATTGGTAAACTGTTAGTCCACATGATATTATTTCATATCGTTGCATATCGACATGTGGGAAAGATAAAGCCACGCGACAGAGGATGCAGAAAACACACAGTATTTACAAGCTCTCCGCTTACTTATGTCCAACAAGTATGCAAGATAACAGGTGAAACACACAAGATTTCATCATCATCTAGTAACCTCCCTGAATGTAAGCATTCAGACGGTCCAACTCCTCACGGTGCTCAATCACCACAGCACGAACAACATCTCCAATGGAAACCATGCCGACCATTCCCTTCTCATCAATCACTGGAATGTGTCGGATTCGGTTATCTGTCATCAATTGCATTGCTCGCAGAACTTTGGTCTCAGGTGTGACAGTAATGAGCTTGTTCTCTTCAGTCATGATGTCCCCAACCTTAGCTGACTTGGATGATCTTCCCTGTACTATTATTTTCCTAAGATAATCTCTCTCAGTGATAATACCCGCAATTGATTCCTGCTCTCCAGGTTTTACAACCACCAGGGCACCGACATTGTGTTGAGTCATCGACTTCACAGCATTGTACACAGTGTCATCTGTAGTGCACCCAAGCCAGGAGCCATCTGCACCTTTACCTTTTGCTTTCAAGATGTCTGCAATAATGGTGCTCTCAAAGCCGTGCTCTTCCATG | |||||||||
gi|212093175|gb|CU593648.1|CU593648 CU593648 SEED34I_KZ0AAH Theobroma cacao cDNA clone KZ0AAH7YG21FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGGGGGGGAGTCCGGACGAAACTAATGCATACCGATGCATAGCGACATGAGGGAAAGATGAAGCCACGCGACAAAGGAAGCACAAAACGCCCAGTATTTACCAGCCCCCCGCTAACGTAGGTCCAACGGGGAAGCAAGAAAACAGGTGAAACACCCCAGAGGTCCTCATCACCAAGGAACCGCCCCGAAAGTAAGCCTTCAGACGGGCCAACTCCTCACGGGGCTCAAACACCACAGCACGAACAACATCCCCAATGGAAACCAAGCCGACCACTCCCCTCTCATCAATCACTGGAATGGGGCGGAATCCGGTAACTGGCATCAATTGGATTGCTCGCAGAACTTTGGTCCCCGGGGTGACAGTAATGAGCTTGTTCTCTTCAGTCAAGAGGTCCCCCACCTTACCCGACGTGGAAGAACTTCCCGGGACTAATATTTTCCAAAGAAAATCCCTCTCCGTGAAAACACCCGCAAATGATTC | |||||||||
gi|213638262|gb|CU623651.1|CU623651 CU623651 LEAVES_KZ0ABE Theobroma cacao cDNA clone KZ0ABE11YL15FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CTGAAGGGAAGAGGAGCCTGAAGGAAATGGCTGAGGATGAGGAAGAGGAGGAGGACGAAGATGCTGGTGCTCTAGGGTTTGTAGATGAAGAAAAGAAGAAGAAAGGAAAGAGAGGATCCAGTACTGGTGGAGGGTCAGCACTGCCTTCTTGTCAGGTTGAGAACTGCACTACTGACATGAACGATGCGAAGAGGTACCACCGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTCCGGTGGTTCGAGTCTCTGGACTCCAGCAACGCTTCTGCCAGCAATGTAGCAGGTTTCATGAATTATCGGAGTTCGATGAAGCAAAAAGGAGCTGTCGAAGGCGTTTGGCTGGACATAACGAACGGCGCAGGAAAAGCTCATCTGAATATCATGGAGAAGGCTCAAACTATTAACTAGAGGCAAGCTTAAAAAGAGTCGAGTTAACTTAACTCTTCCAATTATCCCCATATATACAAGGCCCTTTCCAATGCTCAATTTAGATGTAACTATATGATTTCTAAGCATGCTCTCTCTCTTCTGTCAATCTTAATTTACCCTTTAGCTATACACTGTTTCATGCTCTACCTATTGTTATATCTGCATGAACATTAATCGATCTTTATCTACATAGCCTTTACAAAAAAAAAAAAAAA | |||||||||
gi|212154486|gb|CU503758.1|CU503758 CU503758 OVUL1_7M_KZ0ACAK Theobroma cacao cDNA clone KZ0ACAK5YG14FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGATCAAAGAGCCAGAGTTCCAATAGCAATCCCAGGCAATTCATCTTTTAAGCGTTCCCAAAACAGATAAGGAGCTTAATGACCAAAACATCAGCAGCATGCTCCCTCTCTTCTGTCAGCCAATGGTTTATGCATTTCACTATGTACTGGTACTTACTATACTACGTTGGAGGATTCAATAACTATATCAGGCATAGAAATTTAAGTCTAGTATCAGTGCTTCTGAAGCCTGTGTTCTCGTGTCTTGCCTGCCGCGTAATCTAGGCTTTCTGTACTGATAACCCTTTATCTATGGAGTCTTCTATTGTATCAAAAAAAAAAAAAAA | |||||||||
gi|213643967|gb|CU575993.1|CU575993 CU575993 HYPO23I_KZ0AAP Theobroma cacao cDNA clone KZ0AAP5YP17FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTCTTGGTAAACTGTTAGTCCACATGAAATTATTTCATATCGTTGCATATCGACATGTGGGAAAGAAAAAGCCACGCGACAGAGGATGCAGAAAACACACAGTATTTACAAGCTCTCCGCTTACTTATGTCCAACAAGTATGCAAGATAACAGGTAAAACACACAAGATTTCATCATCATCTAGTAACCTCCCTGAATGTAAGCATTCAGACGGTCCAACTCCTCACGGTGCTCAATCACCACAGCACGAACAACATCTCCAATGGAAACCATGCCGACCATTCCCTTCTCATCAATCACTGGAATGTGTCGGATTCGGTTATCTGTCATCAATTGCATTGCTCGCAGAACTTTGGTCTCAGGTGTGACAGTAATGAGCTTGTTCTCTTCAGTCATGATGTCCCCAACCTTAGTTGACTTGGATGATCTTCCCTGTACTATTATTTTCCTAAGATAATCCGCAATTGATTCCTGCTCTCCAGGTTTTACAACCACCAGGGCACCGACATTGTGTTGAGTCATCGACTTCACAGCATTGTACACAGTGTCATCTGTAGTGCACCAAAGCCAGGAGCCATCTGCACCTTTACCTTTTGCTTTCAAGATGTCTGCAATAGTGGTGCTCTCAAAGCCGTGCTCTTCCATACGAGCAGA | |||||||||
gi|211980420|gb|CU539242.1|CU539242 CU539242 CORTINS_KZ0AAV Theobroma cacao cDNA clone KZ0AAV10YG14FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGATTCTTCTTCTTTGTTGTCTGAAACCTCTCCATCTCATCCATCTTCTCTTTGTTTTCCCAAAACCGAAATGGCAACAAGCAGAGCTGAAGGGAAGAGGAGCCTGAAGGAAATGGCTGAGGATGAGGAAGAGGAGGAGGACGAAGATGCTGGTGCTCTAGGGTTTGTAGATGAAGAAAAGAAGAAGAAAGGAAAGAGAGGATCCAGTACTGGTGGAGGGTCAGCACTGCCTTCTTGTCAGGTTGAGAACTGCACTACTGACATGAACGATGCGAAGAGGTACCACCGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTCCGGTGGTTCGAGTCTCTGGACTCCAGCAACGCTTCTGCCAGCAATGTAGCAGGTTATTGTTTCATGAATTATCGGAGTTCGATGAAGCAAAAAGGAGCTGTCGAAGGCGTTTGGCTGGACATAACGAACGGCGCAGGAAAAGCTCATCTGAATATCATGGAGAAGGCTCAAACTATTAACTAGAGGCAAGCTTAAAAAGAGTCGAGTTAACTTAACTCTTCCAATTATCCCCATATATACAAGGCCCTTTCCAATGCTCAATTTAGATGTAACTATATGATTTCTAAGCATGCTCTCTCTCTTCTGTCAATCTTAATTTACCCTTTAGCTATACACCGTTTCATGCTCTACCTATTGTTATATCTGCAT | |||||||||
gi|211990001|gb|CU503920.1|CU503920 CU503920 OVUL1_7M_KZ0ACAK Theobroma cacao cDNA clone KZ0ACAK5YP23FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ATACGCGGGCCAGGTACCCAGATGTCGCCCTTCTCTAATTTGCAAGTATATCCCTCCACCACTGTGGTGAAACCTACTTGGCCTGGAGTTACCAATTCTGAGACAGATTCTAGGCATCTTAACCAGCAGCAACAGTTACACTCACCAGAGAAACGAAATCTTGTTCTTGGATCCTCTTCGAGCAACTACAGAGGAGGGAAGCAATTCATGTTCTTGCAAGGTGAAAATAACACTCCCCAGAATCAAACACTTCCAGAAGCTTCTGTCTGCCAGCCGCTTCTCAGGGCTACGCCTTTCTCAGAAGGCAGTGGGGGCAGCCACACTATGTTCTGTGACAGGTCAACAACTCCAGTTCAAGATTCAGATTGTGCTCTCTCTCTTCTGTCATCTCCGCAGACACAGACATCTGGGATCAGTTTGAGTAGCATGGTGCAGCCTCGCTCATTTCCCTTGGTGCAGCCCTTAGGTCCAAGCCTACAGAACCACATTATAGAGCCCATGGATTCAGTTGTTGTTGCCAATGGCAGGGACACGGCGGTCCATTGCCCAGGAATGTTTCACATGGGTTCTGGTGGATCCTCTGGCAATGAAGCCCCTCAAACTCTTCCCTTTCATTGGCA | |||||||||
gi|212120534|gb|CU492916.1|CU492916 CU492916 FLOWERS_KZ0AAD Theobroma cacao cDNA clone KZ0AAD11YE24FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGATTCCAGGACACCTCATTAGGAAGTGAAGACATCAATGTTTTTGATGCTGCATCAACCATTCAAGGACTATCTGGGATTTCAGATTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTTCAAGCCATTCATCAGGAATTCCCATGTCCCGTTCCCTTGTCATTCCAGGCAGCCATACCCATTACAACATGAGTCAAGTCTCAGGAAAGCTCATCGGAGTTAGCTCGCAGACTTCAACTACTGGGGTTTCAAATAAGTTCTCTTCATCAGGGATGAATTCAACTGAAGGGAGTCACCTGGGACCCCTACTGATATCTGATGGTAGTGAATCTGCCAACTTTGATATCTCTGGTGGGATTTACCAAGATTCGGAATTCATGAATACCAAGGATCGCCTATCATGCGAAGATGGACCAACAATTGACTTGCTTCAGCTTTCATCACAGCTTCAGCGAGTGGAGCATCAAAGACAATCGATGCAGGTGAAGCAGGAAAATGAGGCTTTCTGCTGCCTCCGAATCACTTAAGTACATGAAAAATAAGGACCAAACACTGTGCTATGGGAGAGGAGTGCAATGTGCTAAAAGGTGTGCAGTTCTGGAGACATCTATACTTGATCTCGGAGTAACATAAAAGCATTAGGGAGAGAAAATGATGAGAAAGTTCAGATGCTAATCTAAACTTCTCAGCAGCTGCTAACAGCTTGATTTTTTTTTTTTTATTTAAT | |||||||||
gi|211975488|gb|CU479454.1|CU479454 CU479454 COPHAS_KZ0AAL Theobroma cacao cDNA clone KZ0AAL2YP13FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTCATTGGTAAACTGTTAGTCCACATGATATTATTTCATATCGTTGCATATCGACATGTGGGAAAGATAAAGCCACGCGACAGAGGATGCAAAAAACACACAGTATTTACAAGCTCTCCGCTTACTTATGTCCAACAAGTATGCAAGATAACAGGTGAAACACACAAAATTTCATCATCATCTAGTAACCCCCCTGAATGTAAGCATTCAAACGGTCCAACTCCTCACGGTGCTCAATCACCACAGCACGAACAACATCTCCAATGGAAACCATGCCGACCATTCCCTTCTCATCAATCACTGGAATGTGTCGGATTCGGTTATCTGTCATCAATTGCATTGCTCGCAAAACTTTGGTCTCAGGTGTGACAGTAATGAGCTTGTTCTCTTCAGTCATGATGTCCCCAACCTTAGCTGACTTGGATGATCTTCCCTGTACTATTATTTTCCTAAAATAATCTCTCTCAGTGATAATACCCGCAATTGATTCCTGCTCTCCAGGTTTTACAACCACCAGGGCACCGACATTGTGTTGAGTCATCGACTTCACAGCATTGTACACAGTGTCATCTGTAGTGCACCAAAGCCAGGAGCCATCTGCACCTTTACCTTTTGCTTTCAAGATGTCTGCAATAGTGGTGCTCTCAAAGCCGTGCTCTTCCATGCGAGCAGATGAAACTGATTCAAAGCGGG | |||||||||
gi|212127655|gb|CU576716.1|CU576716 CU576716 MONILIOP_KZ0AB Theobroma cacao cDNA clone KZ0AB10YL08FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGTTGGGAAACTGTTAGTCCACATGATATTATTTCATATCGTTGCATATCGACATGTGGGAAAAAAAAGCCACGCGACAGAAGATGCAAAAAACACACAGTATTTACAAGCTCTCCGCTTACTTATGTCCAACAAGTATGCAAGAAAACAGGGGAAACACACAAAATTTCATCACCATCTAGTAACCTCCCTGAATGTAAGCATTCAGACGGGCCAACTCCTCACGGGGCTCAATCACCACAGCACGAACAACTTCTCCAATGGAAACCATGCCGACCATTCCCTTCTCATCAATCACTGGAATGTGTCGGAATCGGTTATCTGTCATCAATTGCATTGCTCGCAAAACTTTGGTCTCAGGTGTGACAGTAATGAGCTTGTTCTCTTCAGTCATGATGTCCCCAACCTTAACTGACTTGGATGATCTTCCCTGTACTATTATTTTCCTAAGATAATCTCTCTCAGTGATAATACCCGCAATTGATTCCTGCTCTCCAGGGTTTACAACCACCAGGGCACCGACATTGTGTTGAGTCATCGACTTCACAGCATTGTACACAGTGTCGTCTGTAGTGCACCAAAGCCAGGAGCCCTCTGCACCTTTACCTTTTGCTTT | |||||||||
gi|212321928|gb|CU533347.1|CU533347 CU533347 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK8YE24FM1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGCATCTCACATGTTCTACAAGCAGGCTAAGAAAACCAATCAATGTTGTACCATACTGTGAACTTGTGGAGAAAGCAGCTACGCTGTGATGGCATTCACTTGTTCTAGCGTCTGAAGCTGATGTATGACAAGATGGTGACTGTAACTTGTTTATATGGTTTCATCAATTGATTGTTTGAGAGAATTCCGTGGCTTTCTCTTTCTGGGATGAAAAGGGAAGGGAAACCAAAATGTTTACAAGAAGATTTTCCTATTATAAATATTTTTATTACGTGTACGCTCTCTTCTGACATATAGTAGATTTCATTTCTTGGTTTTTCTGGATGTATGCAATTCTTCTGTTATGATAATAGTATACTTTATCTTTGGCTTGTTTGCTCACAAAAAAAAAAAAAAA | |||||||||
gi|296178827|gb|FC072121.1|FC072121 EST00129 Theobroma cacao-Moniliophthora perniciosa pods incompatible interaction library The TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGTGTTGCTGGTCTTGAGCAAAGGTTTTGTCAGCAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGACCAAGGGAAACGGAGTTGCCGTAGACGGCTTGCAGGTCACAACGAGCGACGGAGGGAGCCTCCACCTGGATCATTATTACCCTCTCGTTATGGCAGACTCTCTTCATCGATTGTTGAAAGCAGTAGAGGTGGAAGCTTTATCATGGATTTCACAGCTTACCCAAGGCTTTCTGGAAGGGATGCGTGGCCAACAGCAAGATCATCAGAGCGTGTACCTGGTAATCAAAACACGGCCACAGGGAGGTCACTTCCACATCCATGGCAAAACAACTCAGAGAATCCTCCGCCTGACCTTTTTCTGCAAGGTTCACCGGGTGGGACTGGTTTGTCCAGTGCTGGAATTCCCTCGGGAGAATGCTTCACGGGAGTTGCTGACTCAAGCTGTGCTCTCTCTCTTCAGTCAAATCAACCATGGGGCTCTAGAAATCGGGCTTCAAGTCTAAGGGTAAACGACATGAT | |||||||||
gi|38499079|gb|CF973319.1|CF973319 PSU_bithreeD03 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTCCGGTGNNTCGAGTCTCTGGACTCCAGCAACGCTTCTGCCAGCAATGTAGCAGGTTTCATGAATTATCGGAGTTCGATGAAGCAAAAAGGAGCTGTAGAAGGCGTTTAGCTGGACATAACGAACGGCGCAGGAAAAGCTCATCTGAATATCATGGAGAAGGCTCAAACTATTAACTAGAGGCAAGCTTAAAAAGAGTCGAGTTAACTTAACTCTCTTCCAATTATCCCCATATATACAAGGCCCTTTCCAATGCTCAATTTAGATGNAACTATATGATTTCTAAGCATGCTCTCTCTCTTCTGNCAATCTTAANTT | |||||||||
gi|212334581|gb|CU607894.1|CU607894 CU607894 SEFERMI_B_KZ0AAM Theobroma cacao cDNA clone KZ0AAM1YF22, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGCTTCCTTGGTTCCTTTCCTCTCCTCACGCGAATCTTATAGGCAGGCACTGTTACACACGAAACCAAACAAAGCAGAAGAATTTTTCGCAGAGAGAGAGAGAGAAAGAAATAGAAATTTGTTGTTGTTAATAGTTTCTTTTTGGGAGAATTGAGAGAGAAAGATGAAGATCACGTCGTTATTGGTGTTGAAGTGCAATCCGGAAGGATCCGATCCGATAATACTAGCGAACGCAATCGATGTGAGCCATTTCGGTTACTTCCAAAGGTCAAGCGTCAAGGAGTTTATAGTCTTTGTGTCTCGAACCGTCGCCAAACGTACCTCTCCCGGTCAGCGCCAGTCCGTCCAGCACGAAGAGTACAAGGTACATGCTTACAACAGAAATGGACTTTGTGCCTTGGCATTTATGGATGATCACTATCCTGTTCGAAGTGCTTTTTCGCTTCTCAACCAGGTTCTAGATGAATATCAGAAAAATTTTGGGGATTCATGGAGGACTGTGCAAGCTGATAGCACTCAACCTTGGCCCTATTTGAACGAAGCTTTGACCAAATTTCAGGACCCCGCAGAGGCAGATAAATTATTGAAAATTCAGAGGGAGTTGGATGAAACGAAAATCATCCTGCATAAAACTATTGATAGTGTGCTTGCAAGAGGTGAGAGGCTGGACAGTTTAGTTGAGAAGAGTTCGGATCTGAGTGCGGCATCTCAGATGTTCTACAAGCAGGCTAAGAAAACCAATCAATGTTGTACCATACTGTGAACTTGTGGAGAAAGCAGCTACGCTGTGATGGCATTCACTTGTTCTAGCGTCTGAAGCTGATGTATGACAAGATGGTGACTGTAACTTGTTTATATGGTTTTATCAATTGATTGTTTGAGAGAATTCCGTGGCTTTCTCTTTCTGGGATGAAAAGGGAAGGGAAACCAAAATGTTTACAAGAAGATTTTCCTATTATAAATATTTTTATTACGTGTACGCTCTCTTCTGACATATAGTAGATTTCATTTCTTGGTTTTTCAAAAAAAAAAAAAAAA | |||||||||