| mature miRNA: ATGAGAGAAGAGAGAGAGCTA species: Trifolium pratense database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86123728|gb|BB934937.1|BB934937 BB934937 Trifolium pratense three week-old plant SSR-enriched library Trifolium pratense cDNA ATGAGAGAAGAGAGAGAGCTA EST sequence (targeted fragment marked with yellow): TTTCCGTACGACCCGCACCGGAGGAGCTCTCGATATCTGGATATCAACTACTGCACCCGCCGGCTCCGCCCGAATTCTGGCACGACGAAGACTACCGCCCGGCGTATCAAGAAGTGTGCAACGTGAACACATTCGACTCTCAGCGCGGGTGAACGGCGGCGAGTAACATGTGACGTCTCTTACACGTAGCCCAGTGCCCCGCTTCTCAAATATACCGAACGCGTCATGAGTGGATTACACGAGATTCCGCACCTGACCCTGGCTACTATCCGAGCGATACCCTCCGCGCAGGTACACGCGGCGCGGGGGTACTCTGCGGGTAAAGTATCGACCCTGTTGAGCACTGACTCTAGTCCGACTCTTGGGAAATGACTTGAGGACGCGTCGCATATGTGGTAGCTGGAAACTGCGCAAGCGAAATACCGCTACTTTTACCGCCGCTGTACACACGCCCTGGATCGAATGCCGTGCGCTGCCCCTCTTTATGGACGGACGATCGACTTCGGCGGGCCAATCTGGGGGGAAGAGCCTCATGCCGAATTCCATATCCAGCTTACCAATACAGCCTACCTCGACGAGCGGCCCGCGTCCCAGCTCGCCCTATAGTGAGTCGTATTAAACCCGCTCGCTGGCCGCTCTATAACTAGTGCATCCCCCAGGCTGCTAGCTTCGCTGGCGCTCTCTCTTTTCTCATTGGTCATTCGTCTGTGTCTCTGACCGGGAGAATAAAACACAGCACAGACCACCCCTATTTTCACTCAGCCCTAGATTCGCTCTCTCTCTCGCACTCTCGCTCTGTCACCGGCTCTACTGAAACCTAACAGATCTCGGGCTTATCCATACCGCCTATTTCGAAATCTTAACCCCTGGGTACCGAGTGACAAATTGCCGGTCCGGTCGTTTTACAGCGGCGGGACTGGATAAAACCCCTGGGATTGCCCCAATTTAATCTCCCTGCAGAAACATCCCGCTTTTCGCCGGCTGGAACTTGTTACCAAAAGAGCCCGCCAACAATCCCCCCTTTCCAAAAAAAGGCCCCCCCCCGGTAGGGGGTATTTGGCAAATTGCTCCGCCGCCCCATTTATTTGGTATAAAATACCCCGGTTAAATTTATTGTCTAAAAGCTGCGGTCAATTTTTTTACCGGAATGTGGCCGAAAACTCCGGCAAGATTCCCTCTTTGAAATTCCACCCCCAATGCCCCCTCCCAAGTGGGTTAAACCCTGTCGCC | |||||||||
gi|86095696|gb|BB906905.1|BB906905 BB906905 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE05188, mRNA ATGAGAGAAGAGAGAGAGCTA EST sequence (targeted fragment marked with yellow): CGGAAATATCTCGCCGGAGATTTGTAAACTTGATGAACTCACTACTCTTGTTATCGCAGACTGGAAATCAATCTCCGGCGAAATTCCTGCCTGCATTACCTCTCTTTCTTCACTCAGAATTCTTGACCTCACCGGAAATAAAATCTCCGGCGACATTCCGGGAAACATCGGTAAGCTTCAGCATCTCACTGTTTTGAACCTCGGCGATAATGCAATCTCCGGTGAGATACCGATGTCGATCGTTAGAATCGCCGGCCTAATGCATCTTGACCTGAGTAACAACCAAATCATCGGCGAGTTACCTTCCGATTTCGGTAGACTGCGCAAACTGAGTCGGGCATTACTGAGTCGGAACCAACTCGTCGGTACAATTCCCGATTCGGTTTTAAAAATGAACCGGCTCGCGGATTTGGATTTGTCAATGAACCGGATAACTGGTTCGATTCCAGTTCGACTTGGAAAAATGCGGGTTTTATCTACTTTGAAACTTGATGGTAATTCTATGACGGGTCAAATTCCTTCAACTTTGTTAAGTAATACGGGTATGGGTATTTTGAATTTGAGTAGAAACGGGTTTGA | |||||||||
gi|86106231|gb|BB917440.1|BB917440 BB917440 Trifolium pratense leaf Trifolium pratense cDNA clone RCE23028, mRNA sequence ATGAGAGAAGAGAGAGAGCTA EST sequence (targeted fragment marked with yellow): ATATATTCTAAAGTCTTGAGCATTATTTACTTGAATATGAATATTACAATGATTAATACCAATACCAAAATGCTAGTTTGCCGATCCTAGTTGTTGAGAAGTAGGAGCTTTGGGGTCTAATAAACCCTATTTATTATGTTTAAGCTTAATGAACTAAAGAGTGTTACTGAATACTCTCTTTGCTCTTGCTACTAAATTTCAATCTGTGGTTAATAGTTCACATGACACTCATCATAGACATTTTTAATTATTGCAAGGTTTATGATTGATTGTTATAAAGAAGTGAAAACATATATTTTAAAGTATTCAATACCTCTACATGCATGTAACACAACTTCATGAATGTAGTGTGGGATATGCAATAATAGAAATAACAATGACTGCAAAAGGACAAATGCTATAAATGACACCCCTTCATGTTTCAACTTTGCTGCTTGATTGTTGTTGCATGATATCTTGGACAAGCAAATTCATATTAAGATAAGAGGAGCCTCCTTTTTCAACAGCTCTATTTGCCATCTCACTTAGTTTACTAGCCCTTTCTCTTCTCTCATTACTTTCT | |||||||||
gi|86114355|gb|BB925564.1|BB925564 BB925564 Trifolium pratense leaf Trifolium pratense cDNA clone RCE34385, mRNA sequence ATGAGAGAAGAGAGAGAGCTA EST sequence (targeted fragment marked with yellow): TTTTTTAAAAGACAAATAATATTCTAAATTGCATTTCTCTTATCAAGTTTCAAGTTTCAACTTTGGTGCTTGATTGTAGTTGCATGATATCTTGTATAAGCAAAGTAATATTAAGATAAGAAGATCCACCTTTTTCAATAGCACTTTTTGCAATCTCACTAAGTTCACTAACCCTTTCTCTTCTCTCTTTACTCTCTTCTCCCTCCACATCCATCACATTACATATTGCTTCCTTAATACCTTCTTTCTTCACAACCACACCTAACTTCTCTTCCTCTCCCCACATCAATGGAACCTCAACACCAAGACTCACACCAATCCTCAAAACTTGAGTAACAAGTTTCTCATTCAAAAATTGATCAGCAAATAACGGCCAAGTTATCATCGGAACACCAAAACTTATCCCTTCCAGTGTCGAATTCCAACCACAATGTGTCAAGAATCCACCGACTGAACCATGTGACAAAATCACCATTTGTGGGGCCCACCCTCTAATTATTAACCCTCTCCCTTTATTCCTTTCCTCAAAATTTTCATCACTAATCCATTTTTCCAACTCTTCACTTTTACCAATTCCATCCCTAAT | |||||||||
gi|86127091|gb|BB938300.1|BB938300 BB938300 Trifolium pratense three week-old plant SSR-enriched library Trifolium pratense cDNA ATGAGAGAAGAGAGAGAGCTA EST sequence (targeted fragment marked with yellow): GCACGAGGCTTTCTAGGGTTCTTCTTTCTCTCTCTCTCTCTCTCTTTTCTCATCCAAATCGAACCAACCCATTTTTTCATCTCTGCTAAATTCCCAACACAGATCTTCTTCTCCTTCTTCCTTCTCTCACCTCAATCACTCTCAACAAACTGTTTCAACTTTCTCACATTCATTTTCATCAATTCTTCATCATCGAATCTACAATTTTTTAGCGTTTTTCTTCCTTCGTTTTTATGGTGGATATGGATGGATTTGGTGGAGGTGGGGGTGGTGGTGATATTGGTGGAGGAGGTCCTAATACTGGAGATCTTAGGCAATTGGGTCATGTTCCTACAGGAGGTGCTGTTTTTGACGCATCACAATATGCATTCTTTGGTAAAGATGCTGTTCAGGAAGTTGAGTTGGGAGGGTTAGAAGATGATGCCCATTTGCCAACTTTTGAGTCTAATGAGGAGGAATTCTTTTTTAATAGAGAACAGGACGAAGATGTAAGATCTCTTTCCGATATTGATGATCTTACAACCACCTTTTGGAAGTTGAACAAGGTTGTCAGTGGACCAAGAAAC | |||||||||