| mature miRNA: TACTCCCTCTGTCCCAAAATA species: Trifolium pratense database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86105211|gb|BB916420.1|BB916420 BB916420 Trifolium pratense leaf Trifolium pratense cDNA clone RCE21836, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): CTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAATCACCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTT | |||||||||
gi|86107778|gb|BB918987.1|BB918987 BB918987 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24791, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): TAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAATCACCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATA | |||||||||
gi|86107132|gb|BB918341.1|BB918341 BB918341 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24046, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): CACTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAA | |||||||||
gi|86098010|gb|BB909219.1|BB909219 BB909219 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE08014, mRNA TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): AGCATACAACTATAATGGTGTTGTATTAATAATGCACTAAGATTACAAACAGTCAAACACCATGTTTTAATTATTGAAATAACCACGGTACATGTGATTCGTCATTCATATGCTCCCTCTGTGACAAAATATAAACAAAATGATTTTTGTTTATATTTTGTTACAGAGAGAGTATTACATAAGTACAAGACTCTTACATTAAACTAAACATTAAAAAGAAAAGCTTTAGAAATTTCATTCATTTTGGAAGATAGCTAGAAGTCTAGCCTATCACTAGGAGCAAAAGTGAGGGTTCCAAGTTTATCTTCAAGGTTAGGAAACCACTGCTATGGAACTACTACTTCCTTCATTGATTGGCATAAAACTCACCCTTTTCTCATAAGCCTTTTTGAATTCACCATCTCCTTTGCTACCCTTCCAAAGCATTTCCTTTTTTTGCTTCTTGTCATTGCTACCATTAGCCATACAAAGACTCATAATCTTCTCAGCAGCTTCAGCCTCATCTTTGCTACTTTGCATCAACTTCTCAACTTCTGCCTTTGGAAGTCTCATTTTCAACCTCACCCCGCCAT | |||||||||
gi|86106938|gb|BB918147.1|BB918147 BB918147 Trifolium pratense leaf Trifolium pratense cDNA clone RCE23832, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): CTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAAAG | |||||||||
gi|86116357|gb|BB927566.1|BB927566 BB927566 Trifolium pratense leaf Trifolium pratense cDNA clone RCE38648, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): TTTAGAAATTAATAATAGTAGAGCTCTTATTCATATATATGTTCTTGCTCCTTTTACATCCACCTTATTGTCTTGGCAACATATAGCAATGTAAACAAAGGTTTGAAATTAGATGCTAATTAAAAACCTAAAATCCTTTGCTTTATTTAAACTATATAATATATTACTCTCTCTGTCCCAAAATATAAGCAAAATGTGGTCAACGAAAGTTGATGAATTTGGTTTAAAATTTAGTCCAAATATATTCACTTTTGTTGACCCCTTTTTGCTTATATTTTGGGACAGAGGGAGTACTTAATAGGCATATATTTAATGCTATCGTACTTTGGGCATCATCTTCTGGAGTACTTTGGGCATTAACTTGGTGTCTCCTATGGAGACTAATAAACCGTTGGCTTCTCAACTTATGGCGTATAAGTTGGTTTCTCAGCTGATGGCTTGTAGACAGACGGCTTCTCAACCGGTGGTTTGTCAACTGGTCCCCTAGAGGTAGGTGATGATTTCCGTTTCTCTACTGGTGGTTTGTACACCGATGGCTTCTCCTGTGAAGGCGAATATCCGGCCGGTAACTTCTCAGT | |||||||||
gi|86107887|gb|BB919096.1|BB919096 BB919096 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24919, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): CACTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAAAGCAA | |||||||||
gi|86108908|gb|BB920117.1|BB920117 BB920117 Trifolium pratense leaf Trifolium pratense cDNA clone RCE26107, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): TTTTCATCGAAATTGAATACGTTACATCATCATATTGCAGTTGTAGAGGATTCAGATTCCTTTTCACCTACATAGTTTAACATGAGACCTAAATTCTCTACCGTTGTTGCAGTATGGAACTCCCTTCGTCCCAAAATATAAATAAAAAGTGGTCAATCAAAGTGGATGTATTTAGGGACAGAGGGAGTAATGCAGCATCCGTAGAGATCCGATTTCTTTAACTTGAAGAAAGCCAAACCAAGAAAATTTAAATAGGAGTGAAGTAAACCACATTAGTAATTGTTCCACATGTGGGGCATACCCACATCAGATAAGTAACTTTCAGAACTTCCTTCTCCTAAGCTTGGTGATGACCCTTTTAGAATTTGATTATTAATAGGGTTTCTTTCCATTTTTGAGAGTTGACTCAAAACAGCTTTTAAAACTTTTCTATCACATGATAAAGGGTCTAAACTATAAGGTGCTTCTCCAAATGTAGTTGCATTGTTATTGTTGGATATAGGTAATTTTGGTTCCATATTATTGGTTGTTATATGGTTGAAGATAGGGTTTGTTTGGTTTTGAGAAAAAATGGAGAAGCAGG | |||||||||
gi|86107545|gb|BB918754.1|BB918754 BB918754 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24527, mRNA sequence TACTCCCTCTGTCCCAAAATA EST sequence (targeted fragment marked with yellow): CTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAATCACCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGT | |||||||||