| mature miRNA: TTTTGGGACAGAGAGAGTAAT species: Trifolium pratense database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86116357|gb|BB927566.1|BB927566 BB927566 Trifolium pratense leaf Trifolium pratense cDNA clone RCE38648, mRNA sequence TTTTGGGACAGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): TTTAGAAATTAATAATAGTAGAGCTCTTATTCATATATATGTTCTTGCTCCTTTTACATCCACCTTATTGTCTTGGCAACATATAGCAATGTAAACAAAGGTTTGAAATTAGATGCTAATTAAAAACCTAAAATCCTTTGCTTTATTTAAACTATATAATATATTACTCTCTCTGTCCCAAAATATAAGCAAAATGTGGTCAACGAAAGTTGATGAATTTGGTTTAAAATTTAGTCCAAATATATTCACTTTTGTTGACCCCTTTTTGCTTATATTTTGGGACAGAGGGAGTACTTAATAGGCATATATTTAATGCTATCGTACTTTGGGCATCATCTTCTGGAGTACTTTGGGCATTAACTTGGTGTCTCCTATGGAGACTAATAAACCGTTGGCTTCTCAACTTATGGCGTATAAGTTGGTTTCTCAGCTGATGGCTTGTAGACAGACGGCTTCTCAACCGGTGGTTTGTCAACTGGTCCCCTAGAGGTAGGTGATGATTTCCGTTTCTCTACTGGTGGTTTGTACACCGATGGCTTCTCCTGTGAAGGCGAATATCCGGCCGGTAACTTCTCAGT | |||||||||
gi|86109562|gb|BB920771.1|BB920771 BB920771 Trifolium pratense leaf Trifolium pratense cDNA clone RCE26847, mRNA sequence TTTTGGGACAGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): AATTTCAATTTCAGTTATACTTTGGCTCCAAGCTAAAACCATTACAATTAAGCTAAAAAGGAAAAAGTGGAGAAAAGTTTCTTAAAATAGTAATTTGGGAACAACAGATTGAAACCGCACTAGTTTCTCTGTCGCAAAAAATAGACACAAACAATCGTCTATGTAGTACTCTGTATTCACACATACTGTATTTCATTCTTCATCATACGCTTCTGTTTCTGTTTTTTTCTCTACTCATAAAAACTAAAAACTAAAGAGAAATTCATAAAAATAAAACCGAAATTTCATAATTCTGTTTTATAGCGTATATTCCGGAGGAGGGTAGTTAAGATCCAGATCCAAAATTCTAACACCGTCATCACGGTGGTGGTTCAGATCAATCACCGACGAAGAGTCCGAATCACTCTGCACTGGTGCCGCAGCCATCGCAGTCGCCGTCGCATAACCGTAATTCACCATGCCGGCGCGTAGAACATCATCGAAGCAAAACGTCTGATTAACCTCCGGCATCGGAGTATACCGGTTCTGAAACGGAAACCGAACAGGAGCCAAGTTTAGATCAAGCGGCGA | |||||||||
gi|86107887|gb|BB919096.1|BB919096 BB919096 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24919, mRNA sequence TTTTGGGACAGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): CACTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAAAGCAA | |||||||||
gi|86111191|gb|BB922400.1|BB922400 BB922400 Trifolium pratense leaf Trifolium pratense cDNA clone RCE29663, mRNA sequence TTTTGGGACAGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): TTAGCCACTTGAATTATTTGAGTTCATTTACTAAATCTAATTATTAAGTACATGAGTTTATTGAGGCAATTTAGAAATTAATAATAGTAGAGCTCTTATTCATATATATGTTCTTGCTCCTTTTACATCCACCTTATTGTCTTGGCAACATATAGCAATGTAAACAAAGGTTTGAAATTAGATGCTAATTAAAAACCTAAAATCCTTTGCTTTATTTAAACTATATAATATATTACTCTCTCTGTCCCAAAATATAAGCAAAAAGTGGTCAACGAAAGTTGATGAATTTGGTTTAAAATTTAGTCCAAATACATTCACTTTTGTTGACCCCTTTTTGCTTATATTTTGGGACAGAGGGTACTTAATAGGCATATATTTAATGCTATCGTACTTTGGGCATCATCTTCTGGAGTACTTTGGGCATTAACTTGGTGTCTCCTATGGAGACTAATAAACCGTTGGCTTCTCAACTTATGGCGTATAAGTTGGTTTCTCAGCTGATGGCTTGTAGACAGACGGCTTCTCAACCGGTGGTTTGTCAACTGGTCCCCTAGAGGTAGGTGATGATTTCCGTTT | |||||||||