| mature miRNA: ATAGTTTCTCTTCTTGATTCT species: Triphysaria pusilla database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159720113|gb|EY159224.1|EY159224 CBTN7466.b1_D19.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): AATACCGCCATTAGTGACGGACTACAAGGGTCTGCCAGATCCTTTAAAGGGTGATGCATTGAACAAGGCTGTGCGTGAAACAGCACAGGAAGCACTGTCTGCTTTGTTTTCATCAGATGAGAGCAAAGCTGCTCCTACTGAAAGTAAGCTCGGCAGTCGAATTCAAGGATTTGGGAGTGCACATTATGAAATGCCATCAGAAGATAAAAAAATCCTTCATCGGTGAAGTTGTTGACATAGGAAGCGCCACAATCAAACAGGGACTGGGTAGTTTTACACAGTCCCCATCCTTAAGGAAAAATAACGAGACTGGTAATTACAAAAGCCCAAATCTTCGACGATCTTTGACTGGGGAAGGTGATTACTCTGACAGGTATGAAGGTGTTGGTTCTCATGCTGAAACTCACAACTCTTCTCGATTCTCACGAAATGCTGGTTCTGGAAACTGGGGTCAAGATATCAGTGCAATCCAGGCAGAAACCAGCAGTGGAGATTCAACTTACAGTAAGAAGACTCGTGAAGAGAAACTGTTAGAGACCATTGTAACATCTGGTGGTGTCCGTTTACAGCCCACTCGAGATGCGCTTCATGTTTTCCTGGTGGAGGCGTCAAAGTTAGATGCGGTGTCATTGGGGCATGCTATTGAAACAAAACTCAATTCCCCTATGTGGCAGGTTTTGAGTCTTCTGGATGGCGTACAAGGTGGTGTAGGGATAAATCATGTACAAAAATCAAAAAATGCACCCCAG | |||||||||
gi|159728988|gb|EY148787.1|EY148787 CBTN11426.g1_D02.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTGGAAAAAATTATCTCATATCTCTCTTGATTCCTGGAAATTATCTCTCCAATTTGTGTATTTGTGTTGCTACTGTTGAAATTACAATATCACATGGAAATGTCAAAATAAAATAACTTAAGTTATTATATAGCAGTTTCTACATGTTCTAAATCCAATTCTACAAACTATTTCAATCATAGTAACAAAACATTTGAACTTACCTATCAGCACCACGCAAAAAAGGAGAGCTACTACTTTCACTGGTATCAGAATATCTGACCGGTTTCATAGCAGGATCTCGATACGCAAAGGCTAGTTCGTCGTAAAACGAAGATATACTGGGATCATTATGATCGTGCCTATCCTTATTTATCAAGCACTCGGCAGGATAACCTTTGAAGCTAGGTAAGAATCGTCTCCGGCAATAACTATTGAATATGAGAGTGAGAATAGGAAGAGGAACTGTTAAGCTCGAAGCAAATGGAACCTTCTTCAGACCGAATATCCCAATGGCAATAACATGCATCAATATTAATGAAAATATCGTCGCGTCGTGAACTACAGGCCAAAACTTCCCACCAGTTTCGAACTTGGGCGCATAAACATTTAATAGCTGATTTCGGTAGATGATGTATCCGAAGCAATAGTAAACCAAGACGAACGGCAAAATTAGGGGTGACAGGAAAAAGTACGTTATACCAAGAAGTTGAAAAAATAGAATCCTCGGAATTTCACTGTGATATTGGTTCGAAGGGAC | |||||||||
gi|159726267|gb|EY183173.1|EY183173 CBTI8960.b2_P07.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): GGGGGGCACTCAACCCTAATCGAACAAATACAAATTGCAGAGAAATGGCTCTCCTCCATCGGCATCAAGGAAAAAGTGTGGCCGTCGAGAACATTCCCTTGGAGTCGAAGCTTCAGTTGCTGAAACAGTAAAGTATAAAACTGAAATTGGAGAAGAAAATTAGGCTGAGGAAACAAAGAACTCAACATCAATGTCCAAAAACCACCACAGCTCCGCCGTGAAAGATGAATCAGACGCAGAGGAAGGAGAAATCATTGGCCGAGATTCGGACGATTCGAAGAAGGCGATTCCGGCTGCGGCCCCTCAGAAGCACCCTTTGGAGCATTTGGACCTTCTGGGTTGGCAGTCTCGCTCCCAAATCCAAACAACAGACTTGGGGAAGCTCAATTCACAATATTTACACCTTCCCAACGTCGAAGATTTCTAGAGGTTGGCATTTGTGTAGAATTTGTGAGAAGAATGCCCGTTACATGTGTTATAACTTATACATGTACTTACTCCTTGTGCAAGCGTTGCACAAAAGACGTGGTTATCTTATCTGTCCGAGGGAATAAAAGTTTTTGCGAGACCTGCATAAGAACTGTTAAGCTGATTGAGAACAAAGAATAGGGAGACAATGATGTATGTGATTCTGTGATATTTTTCTGACTCAAGTAGAATTTAACGACAAAAGTACTTAGGAATATCTTTTCGAGGACTATTATATAGAATTAAAAGACAAACTATCACTTTCGTTCGAGGCTAAAAATCCGTGGAAATGAGCGAACACATCTGGTCCGAGCAAACAAGAATCA | |||||||||
gi|159748452|gb|EY152000.1|EY152000 CBTN13420.b1_H20.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): ACTGAGAAACAGAGAGGGAAACTATGGCGACGGCGGCGGTGACACATTGCCTAAACACTGCCACCACCGGCGCGACGAAGCTAAATAATCCACCGCACTTCATCTCCTTTTCAGGCGGAGTGCAGTTTGGGAGTATTAACTTTAGGCCTCATAAGCAATTGCTCGTAGCTCATGCGGCGGCCAATGGCGGTATCTCAGAAAATGGTGGCGCTTCTGTTTTCGTTACTCAGAAATCATCTCCTTCCCCTTATCAGCCCGCCGCCGCCTCTGATTCTAGGGTAAAGCGACATACCATCTCAGTGTTTGTTGGCGATGAGAGAGGTATAATAAACCGAATAGCTGGTGTGTTTGCTCGTCGAGGCTATAACATCGAGTCTCTTGCAGTTGGGCTGAACCAGGACAAGGCTATGTTCACCATAGTCGTCTCTGGAACAGAAAAAGTGTTGAAACAAGTTGTAGAGCAACTCAACAAGCTCGTAAATGTCTTAAAAGTTGAAGATTTGTCGAAAGAACCACAAGTAGAACGTGAACTAATGCTTGTGAAGCTCAATGCAGATTCCAACACTAAAAGTGAAATCATGTGGTTAGTGGATATCTTCAGGGCAAACATTGTGGACACATCAGATCACACTTTGACCATCGAGGTCACTGGAGACCCTGGGAAAACGGCAGCTGTCTTGAGAAATCTCAAAAAGTTTGGCATTAAAGAATTAGCAAGAACTGGGAAGATTGCTCTGAGAAGGGAAAAGATGGGCGAGACAGCACCATTC | |||||||||
gi|159655270|gb|EY165734.1|EY165734 CBTI10780.b1_G07.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): GACTGAGAAACAGAGAGGGAAACTATGGCGACGGCGGCGGTGACACATTGCCTAATCACTGCCACCACCGGCGCGACGAAGCTAAATAATCCACCGCACTTCATCTCTTTTTCAGGCGGAGTGCAGTTTGGGAGTATTAACTTTAGGCCTCATAAGCAATTGCTCGTAGCTCATGCGGCGGCCAATGGCGGTATCTCAGAAAATGGTGGCGCTTCTGTTTTCGTTACTCAGAAATCATCTCCTTCCCCTTATCAGCCCGCCGCCGCCTCTGATTCTAGGGTAAAGCGACATACCATCTCAGTGTTTGTTGGCGATGAGAGAGGTATAATAAACCGAATAGCTGGTGTGTTTGCTCGTCGAGGCTATAACATCGAGTCTCTTGCAGTTGGGCTGAACCAGGACAAGGCTATGTTCACCATAGTCGTCTCTGGAACAGAAAAAGTGTTGAAACAAGTTGTAGAGCAACTCAACAAGCTCGTAAATGTCTTAAAAGTTGAAGATTTGTCGAAAGAACCACAAGTAGAACGTGAACTAATGCTTGTGAAGCTCAATGCAGATTCCAACACTAAAAGTGAAATCATGTGGTTAGTGGATATCTTCAGGGCAAACATTGTGGACACATCAGATCACACTTTGACCATCGAGGTCACTGGAGACCCTGGGAAAACGGCAGCTGTCTTGAGAAATCTCAAAAAGTTTGGCATTAAAGAATTAACAAGAACTGGGAAGATTGCTCTGAGAAGGGAAAAGATGGGCGAGACAGCACCATTCTGG | |||||||||
gi|159592407|gb|EY171700.1|EY171700 CBTI3330.b1_C18.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): GCCGTGGTAAACCTGATGGCGGGAATGGTGGAAGAGGTGGTGACGTGATTCTAGAATGTTCTCCAGCTGTTTGGGACTTCAGAGGTCTACAACACCATATTAACGCAAAAAGAGGTGGGCACGGGGCTCCCAAAAATATGATAGGAAGCCGAGGATCGGACAAGGTTGTTTTGATTCCTGTTGGCACCGTGTTACATCTTCTAGAAGGCGAGCTCCCCTCTTTAGTTGAGAAGAAGAAGCCTTCCGGACCGTTGGATCCTTGGGACATCCCTGGTACACTCGATTCCGGGTTTTCTGAACCTCCTACAGACGAAACCAAGAAAATCGAGAAGAAAAACTATTCCGCTCATTCTAGTCAAGAAAGTCTAAAAGCTTTTCTCCCAAATTCATCTCCGAGATATAAATCCCAAAACGAACCAGAAGCTGATTGGCCACCCGAGCCAAAAGGCTACAGCGACTGGGAGGATTTTGACAATGAAACGAATATGTCCGAAACAGAGTCCGAAGAAAATTCAGATGAGACGGAACAAATACAATACAACGTCGCCGAACTAACCGAGCCCGGCCAACGAATAACCATCGCTCAAGGAGGTGACGGTGGCTTGGGCAATATACATTTCGCCAGAGGCCCGAAAAAGCACAGGGATGATGATAACGACTCGGACGATGAGCTTTCTGATGACGAGGCTCGTAATATTGGCTTAACCGGTTCCGAAATCCTTCTTCTATTAGAACTGAAGAGCATTGCTGACGT | |||||||||
gi|159692947|gb|EY173803.1|EY173803 CBTI4336.b1_P03.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil ATAGTTTCTCTTCTTGATTCT EST sequence (targeted fragment marked with yellow): GGGGACTGAGAAACAGAGAGGGAAACTATGGCGACGGCGGCGGTGACACATTGCCTAATCACTGCCACCACCGGCGCGACGAAGCTAAATAATCCACCGCACTTCATCTCCTTTTCAGGCGGAGTGCAGTTTGGGAGTATTAACTTTAGGCCTCATAAGCAATTGCTCGTAGCTCATGCGGCGGCCAATGGCGGTATCTCAGAAAATGGTGGCGCTTCTGTTTTCATTACTCAGAAATCATCTCCTTCCCCTTATCAGCCCGCCGCCGCCTCTGATTCTAGGGTAAAGCGACATACCATCTCAGTGTTTGTTGGCGATGAGAGAGGTATAATAAACCGAATAGCTGGTGTGTTTGCTCGTCGAGGCTATAACATCGAGTCTCTTGCAGTTGGGCTGAACCAGGACAAGGCTATGTTCACCATAGTCGTCTCTGGAACAGAAAAAGTGTTGAAACAAGTTGTAGAGCAACTCAACAAGCTCGTAAATGTCTTAAAAGTTGAAGATTTGTCGAAAGAACCACAAGTAGAACGTGAACTAATGCTTGTGAAGCTCAATGCAGATTCCAACACTAAAAGTGAAATCATGTGGTTAGTGGATATCTTCAGGGCAAACATTGTGGACACATCAGATCACACTTTGACCATCGAGGTCACTGGAGACCCTGGGAAAACGGCAGCTGTCTTGAGAAATCTCAAAAAGTTTGGCATTAA | |||||||||