| mature miRNA: TGATTGAGCCGTGCCAATAT species: Triphysaria pusilla database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159582999|gb|EY134999.1|EY134999 CBTH474.g1_C23.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusill TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTATGAAATTGATCAAATTATTGGCAACAGTGACGAAGTTTGAAATATATATCAGGGAGGCCTAAAAATCACCGAACAACTTAGACAACTTAATCGGGGGGCCGGCCTAATATATATAATTTTTTCGAACGAACTATGAATAAAAAATACACTATTTATATTTTTTCTTAACAAATTACAAATAAAAATACACTACTGCACAAAAAAATTGGGGGTGAGACCCCCCTGAACATGTAGAAGCTTCGCCCATGATTGGCAGGGCTTTCATTTCCCAAATAAGGCTATGAAGCTTATGATGCTTAGTTTCTTGCCTACAACTCTTGGATCTTCCAATTGAACAAGCAACTAAACATGTTTCCAACAACAATTATCATAAAATAATCACTTAATATTAAATGTAAAAGAATTTCCAGGATTTAGACTTTAAGAACATAATAATACTTAATCAATTATCATAAAATTGACGAGACGAGACGAAAAGCAAAGCGGAACATGATATTGGCACGGCTCAATCAAACTAAAGGACCCAATTCTTGGGAGATTTGATTTGATTGAGCCGTTCCAACATCATAACTAGCTACTACAAAAAGTGTGGCTTAGTTTTAATTAAAAAAAAAAAAAGTTTACCTTTATTGCAATCCTCACGTGGAAGTTTGAGTCGGATCATCAAGTCATTGCGATTTAGGATGTCTTGGTGAAGAGAA | |||||||||
gi|159698581|gb|EY144461.1|EY144461 CBTH9098.b1_C20.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): AGGTGACACTTGCTGTTCTTTTGAACATTTTGTGTCTCAAATGAAGAAGTCTGATTCGACCGAGTTAGAGAAAAAGCTCGATAACAGCAGCAGGAGTCAAATAAGGGAAGATAGTGAGTACGTGCGATTGGTTATACCGAGCGAACGAATATTAGCTGAAGCAGATATAGAATCTCATACGCAGACGAAAAAAGAGGCTCTTATATGGTGGACCAAGTTCATAATCTGGTGTTTAATCACTTTGATACTGCTGCTCGTATTCGTTAAGTGGGGTGTGCCGTTTCTTGTGGAGAAGGTTCTTTATCCGCTTTTGCAATGGGAAGCGACTGCATTTGGCCGCCCGGTGCTGGCACTTGTTCTAGTAGCTTCTTTGGCTTTTTTCCCCGTGCTTCTATTCCCGTCTGGTCCTTCGATGTGGCTAGCTGGGATGATTTTTGGGTATGGCTTGGGATTTGTCATTATTATGGTCGGAACAACCATTGGAATGGTCTTGCCGTACTTGATCGGTTTACTCTTCCGTGATCGAATTCATCAATGGTTGAAGAGATGGCCTCAAAAAGCTGCTATGATAAGGTTAGCCGGAGAAGGGAGTTGGTGGCATCAGTTTAAAGTGGTTGCACTTTTTAGGGTTTCGCCATTTCCATACACGATATTCAATTACGCAATTGTGGTGACGAGTATGAGATTCTGGCCATATTTGTGCGGTTCAATTGCTGGGATGATACCAGAAGCATTCATTTACATTTACAGTGGCCGGCTAATAAGGACATTAGCAGATGTACAATATCGGAACC | |||||||||
gi|159582998|gb|EY134998.1|EY134998 CBTH474.b1_C23.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusill TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): AATGGAGAAAGTGACATTATTGTGCCAATTGATAAAATGTCATCAACCACTAATATATGTCTATAAACATCTAATGATAATATTTATATTATAAGAGTCCCAAGTTTTCAATCAGGCCAACCAACGACCAACATTTCCAACTACCAAAATCCTCTTTTTTCTTCCCTCCAAAATCCAAATGTACCCATTTTATTATTTTTCAATAAAAGGACATTTTATTAGGTTTCTCACTTTGTTCTATAATTAGGTATTCTCTTCACCAAGACATCCTAAATCGCAATGACTTGATGATCCGACTCAAACTTCCACGTGAGGATTGCAATAAAGGTAAACTTTTTTTTTTTTTAATTAAAACTAAGCCACACTTTTTGTAGTAGCTAGTTATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCATGTTCCGCTTTGCTTTTCGTCTCGTCTCGTCAATTTTATGATAATTGATTAAGTATTATTATGTTCTTAAAGTCTAAATCCTGGAAATTCTTTTACATTTAATATTAAGTGATTATTTTATGATAATTGTTGTTGGAAACATGTTTAGTTGCTTGTTCAATTGGAAGATCCAAGAGTTGTAGGCAAGAAACTAAGCATCATAAGCTTCATAGCCTTATTTGGGAAATGAA | |||||||||