| mature miRNA: TTTTGGGACCGAGGGAGTATT species: Triphysaria pusilla database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159705563|gb|EY163590.1|EY163590 CBTN9466.g1_C16.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TTTTGGGACCGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAAAAAAAAAATTTTTTAAAAAAAAAAAAAAAAATGGGGAAAAAGGGGCCCCCCCCCAGTTTAAAAAAACCCCAAACCCCAAAAAAAAACAAACCCTTTTTTGTTTTTCCCCCGGGGCCCCCAATTTAAAAGGAAAGGGGGGGCCCCCCGGGGCCCCGCCCAAAAAAAATGGGATTTTTTACCCCAACCCCCCCCCCTTGGTTAACCCCCCCAAAAAGGGGGGATTTAAAATCCCCCCCCCCTGGGAAAAAACCCTTAACAAAATTCCCCCCGGGGAAAATGGCCCCCCGGGGGGCCCCCCCCAAAGGGCAAAGGGGGGGGGGGGCCCCCCCCCCCCTCCCGGGGGGGCCCCCCCCTAAAATCCCAAAAAAAAAAAAATTTTTTGGTTGGGGGAAAAAATTCCAAAAAAAAGGGCCCCCCCCGGAAAAAAAAATTTTCCCCCCCCCAAAAATTTTGGGCCCCCCCCCGGGGGGGGGGATTCCCCCCCCCCAAAAATTCCCCCGGGCCCAAAAAAAAACCCTTCCCCAAAAACCCGGGCCCCCAAATTTCTTTGGGGCCCCAATTTAGGAAGGGGTAAAAAACCCCGGCAAAAAAAAAAACCCCCCCAGGAAACCAAAGCCCCCGGGTTGGGGGAAAAAATTTCCCCCAAAAACCCGGGGGGGGGGGA | |||||||||
gi|159601249|gb|EY135027.1|EY135027 CBTH4762.g1_D15.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TTTTGGGACCGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACAACCATTTGATTTTATTTAAAAATTCAAAAAGAAAAAAGTACAATCAATTTCCCAGGGTTACAAAGGGAATCAGGACCATTTTTGTTCCTTATTTACAACAAGTTAATTAAAAAAGCCCTAAACATTTTGAAGATTCTTCCGAAAACTAGGAGGATTTGAACAAAATTCCCCGGTCCCAAAAACAGCTGGAAAAATTTCCCCAAAATTTTCGGCTTCAATCCCTTTTTCCTTCTGGAAGACTTCTTTTTGAACATGCTTATCTTCTTCAACTGAAAAAACCACAGTCTTCGGTCCATGTTGGCCTTGCACAAACGCCTCTTTCACCCCCCAATGTTTGTCGGTTCAAAAGAAATCGGTCCCCTCTTCAACTTCAAAGGCAAACTTCTTTTTCCCCTTCCCCTTCTTGAGCAAGCCCCACAAAGCGAACAAGCAAAATACGGGGAAAAAAATAAAGCCGAATGAAACGAACCCCACTATGATTACGGTGGGCCCGTTATCGTCGAAAAATAAAAATAAAGGAGGTGGTGAAAAGGCCATTTTTGAAATTGTTGGGAATGTTGACCC | |||||||||
gi|159679315|gb|EY149778.1|EY149778 CBTN11917.g1_I03.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi TTTTGGGACCGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAACCAAATTTCCCCCAAAACCCCCAAAAGAGGGGGGGTTTCCCCGGGGCAAAAAAAAAAAAGGAAACCAAAACCCATTTCCCCCACAAAAACTTCCCCATTCCCCCCCCCCGGGCCTTTTAAAACCCGGGGTTTTTCGTAAAAAAATAAAGCAAACAAGGGGGGGGCCTTGGCCCGAAAAAAAACCCCCCCCCCCCTAGAAGGGGGGGTACCGCCCGTAAAAAAAATTTTCCCCCGGTCACAAAAATGGGAGCTTTTCCACCCGAGGGGGCCGCCCCTGGGAAACCCCTTTCTGGGGGGGGGAAAAAACCCGGGGGAGGCCCGTTCCGCATTGGGAACCATTTCCGGGGGGAAACCCCTTTCCCCCCCCCAAAAAAAAAGCCCCCAAAAAAGGGGGGTTGGCCCAAGGAAAAAAATTTCCACAAATTGCTTAAAAGGGGGTTTAAAAAAAACCCCCCAGGGGGGGGCCTCCGCGGAAAACCCGGGGGGGCTTTCCAGGGGATCCCCCCCAGGGCCCCCGTATTGGGGCGGCCCTTGTCCCGGATTAAAAAAATTGAAAAGGGGTCCGGGAGTTTTTCCGGGGGAAAGGAAAAAAAAATTGCTTTGGGGCCGGGGAGCAAAAAAAGGCCCCCCCTTCTTAAAAAAGGCCCAGCCCCCCCGGGGGAAAGT | |||||||||
gi|159742375|gb|EY133637.1|EY133637 CBTH4127.g1_M24.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TTTTGGGACCGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCCAAAAAAAACCTTGCCAACAAAAAAGGGTTGGTTCCCCATTCCAGAACCAAAAAATATGTACCGGGAAAACCACCAACCACCCTTTGTTTGACCAGGGCCTTGACCAAGATTCCCCAGGGCCCCATTTTCCATTTGAAAACCGATCAAATTTGCCACCAACAATCCTGCGTCTGAATCTGACCCGTCAAAATAATCCTCCCCCGGGCCCAAAAAACGATCCCCCAATTCCCCCCATCCCGGGATAAAACGAAACTCTTCATTCAACGACACATCGATCTCTGAAGTAACAATTGTCCGTGACGGGAAACCTTTGCAAACCCATTGTATTCCCCCCCGGGCCCAAATGAGGTTTAAGAAAAAAATGGGCGAATCCGGAACCCCCTTTTGTACAAATAACCCCATCCCCCGAATAACAAAATTGCCCGTAACAAAAACAGGGTCCAGGAGGAAAACCTGGCCCCCAAAAAAATCTTTGGGAAGTTTCCCCGAAAAAAACCGCTTCCCATTGGCCCCCTCCCGGGGGAACAAAAACCTTCCCATTTTGATTCCCTTGCAACAAGCACGGAGGGCATTTTCCCTACTTTCACCCCTTCCAAAAATGGAAACCCCCCCCCATTTCTTGCGAAAGTCCACACCCGT | |||||||||
gi|159693571|gb|EY146517.1|EY146517 CBTN10381.g1_I03.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi TTTTGGGACCGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCGGAAAAAAAAAACCAAAAAAAAAAAAAAGGCCCCCCCGGCCCAAAAGAACCCAAAAAAAACAGGGAAAAACCCCCCAAACCCCCCCCCCCAAAAAAAAAAAATTTTCCCAAAAATTTTTTTTTAAAAAAACCCCAAAAAAACAGGGGGGTCCCAAAAAAACCCCCCCCTTTTGGAAAAAAAAACCCCTTTTTAAACTGGAAAAAAAGGGCCCAAAAGGGGGCCCCCATCCCCCCCAAAAGCCCCAAAAGGGGCCCCCCGGCCCAAAAAAAATTTCCCGGGGGGGGGGGAAAGCCCCCTTGCCCCCCGGAAAAATTTCCCCCCGGGCCAGGGGGACTTAGGTTGGGCCGAAAGGGATCCCCCAAAAAGGGGGGAAAAACCCCCCCCCCCCCCAAAAATTGGGGGGGAAACCGAAAACCATGGGGGGGAAGGCCCCCAACCCCCCCCAATTCCCAAAACAAAAACCCCGGGAAGGGAAAACCCCCTGGGGGCCCCCCAAGGCGGGGGCCAAAGGGGGCCGGGAAAAAAACCAGGATCCCCGGCCCCCCCGGGCTAATGGGTTCCGGGAAAAAATGGAAAATCCAAACCCGGAAATCCGGAAACTTTGAACAAAAAACCCCAAACCCCGCAACAAATATTTCCCCGGTTCCAAAAAATTTACC | |||||||||