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mature miRNA: AAAGTTGCTGTCTCAAGCTCT
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|290775361|gb|GW667545.1|GW667545 M1126550 SSH cDNA library of T. aestivum cv. Chinese Spring Three pistils mutation Triticum

AAAGTTGCTGTCTCAAGCTCT
|||.|||||||| |||.|||
TTTTAACGACAGCGTTTGAGT

EST sequence (targeted fragment marked with yellow):
GCGTGGTCGCGGCCGAGGTGTGAATCATACCTTCCAAAGCTCCAGCTATGAGTTTGCGACAGCAATTTTTGACGATTGCAAGTTTAAAATTGATGATGAGTGACTGATTTTTCATATTAGCATGTTTGCCCTCTACCTGTTTCTTTTAATTCGATTCAAGGTTTGTGTTTGCTATACTGATAGAATGCTTGAGCACCCAGAATAATCTTGACTGCCAGAGCAATGCACCTGGCAACACTTGCAAATTCTTTATTCATCGCAGTTATTGTTCCTCCTTAAGCTGTTGGTCTGTTTGTTATCATGTGTTGGCATTTGTTTTTTTCCGGATCAAAATTAGCGAAGAAATGTAACACGCCTGCAACGGTTTGAAAAAAAAAAAAAAAAAAAAAA