| mature miRNA: AGTAGTGATCTAAACGCTCTTA species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222363487|gb|GH726036.1|GH726036 G118.101O17R010921 G118 Triticum aestivum cDNA clone G118101O17, mRNA sequence AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): AATAAAAAANCTTATTAAACCAAATTTTACAAGACATACATTCATAAATGACCCAGGATGTACTTTCTCAATAGCTACTTTTTCATGATGTCGGGAAGATCAAACACACGAGACGGCTGACAAATTGAAGGTATGGCAACAACTCCAGCAACTTGCATCCAATATACGCCGGCGACACCCAAACGATCACAGGCACAAAGAAACGTCCAATGAACTGAAGACACAACATCAGCACCATCGGCCTCAGGTAATATCCCGATGCAATTCTTCATGTGTGTGCCAGATAAACAACATTAATCTCCAGATGTACTGTATGTGACAACGTCCATTAGTAGTCATCACCAAATGCACTTGCATGCCTGCAAAAGCAAAACACTATTAAGTACTCTCTCTATAGAGATATAAGAGTGTTTAGATCACTACTTTAGTAATCTAAACGCTCTTATATTTCTTTACGGAGGGATTACAAAATAAATCATATTACATGATACTATGTTAAGGAAACTATACGCACTAACAAAATCACATTGGCAGATATGAGAGTCCAACATACGTTAAACCCAGCAGCTCACCAGACAAAAAGAAAGAAAGAACAACCTCTAAACT | |||||||||
gi|143797783|gb|CJ963706.1|CJ963706 CJ963706 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul33c1 AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): CGAAAGAGTGATGCTGCTCGAGAGATTCTGAGAGAGATAAAGACAGTTTTGGAACTCTCCAAGAAAATGAGGCTTGATCTCGGTGTCTCTTCTGAATCCATGAAACCGTCAGAGAAGCCTTTAGCTGGAGCTGTGAAGGACGAGCCCACAGAGCCAGTTCCATCTGGAGAAAGAAATCAAGTTCCTCCGACAGGTCAGCCTGCAGTTCCTCCTAATATTGCAAATGATGGTGCACCGGCCACCCAAGCCTGATAAGTGATAACTCAGCGAGTGCAGCAGAGAAAATACCAGAGGGGAAGGGAACCCTAAGCAGTGAGATGGCAAATCACCCAAAGCACCTCGTGAAAACAGTGCAAGGGTCTTATGTGGTTGGTGGATCTCCTGTTGGCTGGAATTTTCTTGTTTGGCTTGGTGGTAAAATAATGTATTATGGGGTTGCCAAAGAGGTGTTTCGGACGCGCCAAGCTGCAAATTGAGATGTTCCCTTCAAATTGAAACTTTCTGATTTGTAATGTACTCCCTCCGTAAACTAATATAAGAGCGTTTAGATTACTATTTTAGTTATCTAGACACTCTTATATTAGTTTACCAGAGGAAGTAC | |||||||||
gi|143799591|gb|CJ965512.1|CJ965512 CJ965512 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul39c1 AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): CGAGGACGAGATCTCGAGGCTGATGTCGGAGGGCAAGGTCCCCATCGGCGTCGGGGAGAACACAAAGATCAGCAACTGCATCATCGACATGAACGCGAGGATAGGAAGGGACGTGGTCATCTCAAACAAGGAGGGAGTGCAAGAAGCCGACAGGCCGGAGGAAGGGTACTACATCAGGTCCGGGATCGTGGTGATCCAGAAGAACGCGACCATCAAGGACGGCACCGTCGTGTAGAGCGCCGCCGGGTCGGCGCGACAACCTCTGTGCTGCATTGATCGTCGTCGTTGTCTCGAGGCCGGGACTGAAGAAGTGATCCCGGGACGGGAGACGTTTGAAGCTTGAATGATCGAGACTGAAAGAGAAGGCGCGCGCATGCAGCATTAGTGGTAAAGTAAGTAGTAAGTAGCAGTGGAACAAAGTAATAGTCGTTTTTCCCCTGTACTCCCTCTGTAAACATATATAAGAGCGTTTAGATCACTACTTTAATAATCTAAATGCTCTTATATTTCTTTACGGAGGGAGTAATAAATAAGAGGCTGTGTGTTGAGGTAAAGAAGTGGCAGCGATCAAACAAACTCCCGGGGGATGTTCGTGTAAATAAAACTCTATCTAGAC | |||||||||
gi|222366590|gb|GH730641.1|GH730641 G750.118J22R010803 G750 Triticum aestivum cDNA clone G750118J22, mRNA sequence AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): AAACTAATACAAGAGCGTTTAGATCACTATTATAGAGGGAGTTTTCCGTACACATCCAAAACAACGAAGTAACACCCTTTTTGCCTCCAATAAATCAAATCACGACCTCCGTTCAACGGCCAAAACTTCAAACACAAAAATTGTACACATCAGCGGCAGGCTGAAATTACAGTGGGCATGCCGGGACAAAAGTAGCAGGCAGAGCTATTATACACGACTAGACCACGATCCAGTCCCTGTGGCAACTCAACAACACCTTTGCAAAATCAAAACCCTAGACCCCCACCCCCAAAAGGGAACAGAAAGAATACCTAGTACAATAACACTATTTCCTTTTGCCATTCCAATTGGAAGCAAAAAAACACATACACCCCATTATATCCACCGGCAAGCTGGGTATATACAAGTGAAGCCTCAGCGGCTCTTCAGAGAACCTCTGAGTTGATATGCCATACTTCTCATGCTAGGGAAACAGCTTGGAGAGCTCGTAATTAGCGCTGACCTAGATGAAGTTATATTCCTCATCTTTGTAGTACTTCCACTTTCTGGTAGATGATTCTATTTGGGCATGGCTGTGAG | |||||||||
gi|143801907|gb|CJ967828.1|CJ967828 CJ967828 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul8m13 AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): GCAGGATTAGCTGCCGGAGTCTGGACGNAAGGAGGAGATATTCGCAGGCCTGCACAAGGAGAACACAACGGTTTTCCGCCCCAAGTTAGATGACGCACACAGGAAGAAGAGAGGAGAGTCCTGGAACAAGGCGGTTTCAAGATCATTTGACCTGGCTGACCTTTCTCTCTAGTTTGTTACACCTTGTTGCGCGGCAAAATTGGATCAGTGTGTGCCAGCCCATGTTTGTCGACGAATAAATGGTATGTTGTACATTATTTCGGTGGGATTTTTCTTTGGCTTTATATAGGAAGAATTGGAGCATAAATGTCCTTGTATATCTATAAGTACAGGAGCATCTGGATTCTTCAGAGAGAAGTGCTTGTGGAGTAACAAAATTCAGTTTCATGATACTTCCTCTGTTTTAAAATATACTCTCTTCGTAAAGAAATATAAGAGTGTTTAGATCGCTATATTTCTTTACGGAGGAAGTATTTGCAGATCTAGGTTTGTCCTAAGTTTGTAGAAATATGCAGCTTTGTAATTAGGCTTTCGTAGGCCAGCAGAAGCCGTGCATCCTGAGTTGCCCACAGCACAAGTACACGTCCCTACCTAGTTCCCTACTTCGTGACGGCAGAGGCTGCAACACCATACCATGCCAAGTTCTACTGCATGCTTTATGAAAAAAACAAAAAGAAACTCTAGTGCATTATCGAACTCCTTCAGCAAAATATGGCAAAGTATTTGTAAATCTAGT | |||||||||
gi|222363610|gb|GH722925.1|GH722925 AZO3.101E11R011123 AZO3 Triticum aestivum cDNA clone AZO3101E11, mRNA sequence AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): AGCAGAATAATTCACATTCCTCTCATAGATATTATCAGAAGTTCAGCACTGTACTTCCACATACAGTACAATAGAAGGGGGTACTTTCTCTGAATAATTCCAGAGAAATAACCTACACCTGGTGCTGTCCAATGAATGGGTGGATATACAACAATGGTGGGGAATGGATGCATGCGGTGGATCCAATTATACACAGGGAAACAACTACAAATCTGCACACATACATACTCCCTCTGTAAATTAATATAAGAGCGTTTAGATTACTATTTTAGTATTCTAAACACTCTTATATTAGTTTACGGAGGGAGTACTACATAGCGCACACGATCATATACACTAGAAATCAGCAATGACATTGTAGCTCTACGGTTTTACTTGGCGAGGATGGTGGCGCCGCAGGCGGCCCCGGCGTGCTTCCCTTCGGCAAACACCAGGTTCCCCCTCACGAACGTCGACAGGACCTTGCCGGATAGCTCCTTCCCTAGGTAAGCCGAGATGTTCCGGTGTTTGTGATATACAGCATGGGTGTCATCGAGGTGGAACTGCGCCTCGGGTTTCCACACCACAATGTCGGCATGGTACCCCGGCAGAATAGACCCCTTGTTCTTCTGCCCCGCGAGCTCAGCGGGCTTCTCGCTCCACCATGAGGCTAGCTGGTTCAGGGTGATGCATACTTTTTCCCATGTGACCATGTTACTGGGAGGACAACTGAGAGATGAAATACCTCCCAGCCTTCATGAAATGCCT | |||||||||
gi|219524567|gb|GH456425.1|GH456425 XZ9104_CY32_193 SSH cDNA library for wheat adult plant resistance to stripe rust Triticum ae AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): GGACACTATTTACCAGCTACTCCATCTCTAGAGAAACGTAAGAGCATTTAGATCACTAAAGTATTGATCTAAACGCTCTTATGTTTCTTTAACGGAGGGAGTATTTACTCAGTAGCATAATTACATTTGTGCAGAGAACTGGTGCGCACTATCA | |||||||||
gi|282836258|gb|FL488870.1|FL488870 CWFTALYZ1-14-B2-T7_D16_B08 Wheat seedling full-length cDNA library Triticum aestivum cDNA cl AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTAAGTGTCTTAATTTTAGTATAATTTTGAATTGAATCTAGAATAAAGTTGAGGACATTTATTTTGAGACGGAGAGAGTAATAGTGAGGGCAAAGTTGCTTTCCGTGTCCGAAGCAGCCGCGTAACTGGATATACTACTAACTGGCTACAATGACTGCGAAAAATACAACTGGACATCGGTCTATACCAGAAATCTACTCCCTCGGTAAAGAAATGTAAGAGCGTTTAGATCACTAAAATAGTGTTCTAAACACTCTTATATTTGTTTCCAGAGGGAATACTAGTCTAGGATCCAGCAGCAGCACGGTGCAAACTGAAGACTTGGTAGAGCTGTACATCATCATTCACATACAAGCCTATCGTTGCCTCTCACTGCTGCTGGGACTCTGGAATCCGGCGTACCCATCTGAATTTTCCAGTAGTACCAAAAACATTCAGAAGCGCGGCAGCAGCAGCAGCACCACCAGGTGGGTGCATTCTTCAGAGGAACGCCGCAGCTCGGCGACCACCGGCAAGCAGCTGTACAACGGAGCGGCAGATATATGTCCATGTTCAGCTGAGCACGTCCACCGGCCAGAATCTCCGCCACGTTGAGATCTCGTCTTTGGTCTGGAGCTTCCTGATGCCGCCGTAGAAGCCGTCCGTCTCGTCCCCTTTCTCCCGGTGGTCTTTCCTGCTCACCGTCGTCTGCCTCCACCTCGACCCGGCCGCGTAGTGCTTGAACTCCAGCATGATCGTATCATCTTCATGGCAGCGGC | |||||||||
gi|143802193|gb|CJ968114.1|CJ968114 CJ968114 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul9m13 AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): GAATAAATGGTATGTTGTACATTANTTCGGTGGGATTTTTNTTTGGCTTTATATAGGAAGAATTGGAGCATAAATGTCCTNGTATATCTATAAGTACAGGAGCATCTGGATTCTTCAGAGAGAAGTGCTTGTGGAGTAACAAAATTCAGTTTCATGATACTTCGTNTGTTTTAAAATATACTCTCTTCGTAAAGAAATATAAGAGTGNTTAGATCGCTATATTTCTTTACGGAGGAAGTATTTGCAGATCTAGGTTTGTCCTAAGTNNGTAGAAATATGCAGCTTTGTAATTAGGNTTTNGTAGGCCAGCAGAAGCCGTGCATCCTGAGTTGCCCACAGCACAAGTACANTTCCNTTTCTTAGTTTT | |||||||||
gi|189908922|gb|FG618712.1|FG618712 S11_CY23_Contig43 Transcript derived fragments (TDFs) from wheat leaves inoculated by stripe AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): TGATGAGTCCTGAGTAATCAAGCAAGCAATATACGTACGACAAGCTATGCTCTACTACTACCTCCGTAAGCAAATATAAGATGATTTAGATCACTACTTTAGTGATATAAAACATCTTATATTATTTTACAGAGGGTTAGTCAATGACATATATCCCGGAGGTGTTGCAGTGGGAAAAAAAGATGTTGCAGTGGATGGGTCTTCTAGGTGGGGCACTGGAAGCCGGAGGGGACGTTCTTGCCGCAGTAGTTGACGAGCAGGCTGAGGTCGGTACGCAGTCTAC | |||||||||
gi|143796742|gb|CJ962665.1|CJ962665 CJ962665 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul2j05 AGTAGTGATCTAAACGCTCTTA EST sequence (targeted fragment marked with yellow): AGCTTAAACCTGGACCAGNTCATCGCCGCGTTCGCCAAGAAGCAGCTGAGNCCGCGGGACCTCACGGCGCTCTCCGGCACCCACACCATCGGCTTCTCGCAGTGCCTCAACTTCCGCGACCACATCTACAACGGCACTAACATCGACCCGGCGTTCGCCGCGCTGCGCAAGGGCGCCTGCCCCGCCCAGGCTCCTAACGGCGACACCAACCTCGCGCCATTAGACGTGCAGACGCCGCTCCTCTTCGACAACGCCTACTATCGCAACCTGGTGGCCAAGCGCGGCCTGCTCAACTCCGACCAGGTGCTCTTCAACGGCGGCTCTCAGGATGCGCTGGTGCGCCAGTACGCCGCCAACCCGGCGTTGTTTGCCTCCGACTTGGTGACGGCCATGATCAAGATGGCGAGCCTCACCCCGCCCAGCGGAACCCCCTCCCAGATCAGGCGTAACTGCAGGGTCGTCAACAGCTGACGCAACATGCATCTTCGCATCGTATCTACGTGTTACAGTGTTAAGTAGTATACATGCACAACATGTAAATACGCATGCATGCATGGCAGAATAAGAGCCGTTTGGTTTCACAAAGTAATTTGTATTATTTCCTTTGTAAAGAAATATAAAAGCGTTTAGATCACTAGAAGGAGTATATACCTGGGGCGGGCACAGGTCCAGAGGTGAGTAACCGGACCCTCCACCTTCAAGATTGTAAAATACCTCCTTCATC | |||||||||