| mature miRNA: ANTCCCTCCGTCCCATAATAT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222363811|gb|GH723815.1|GH723815 AZO4.105M19R011122 AZO4 Triticum aestivum cDNA clone AZO4105M19, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GCCAGGAAACAATAATTTTCTATAGTATTGACAAAGCAAGAAAACAATCTTAGCCATTCAAGCTGAAGAACGATAGATACCGCACTTCCATTACCAGAAATATTCATTTATATAGTTACCAAAAAATATGCAAGCTATGTCTGTATCAGACACACATACAGTATAACACTTCAATGACTGAGGGGTAAATTGTGAGCTAGCAATGCAATCATGGAACACTGACATATAGTTATTCATTAACACATTGTGGCTACACTCTTGAAAAGTTGAAACGAACCAAACATAAAAAAAAGGAACAGACAAAATCAGAAAGACCAGAGCAGGATCTATAAAATCTTCAAGGCAAACAATCATTGCCTACAACATACTCCCTCCATTCCATAATGTAGTGCTTCCTCTATCCACGTGCTTCAACTTTGACCGTAAATTTAACTACCAAGACCGATTGCGGCGGAAGCAAAAATTATATCAGTGAATTCGTATTCGAAAGAAGTTTTCAATTATATAATTTTTTCTCCCGCCGCAGTTGGTCTCATTGGTTAAATTTATGGTCAAAGTTGGACCTCCGGAAGCGCGGGCGCACTATATTTTGGAACGGAGGGAGTATGACACAGCACAGTGTTATATTGGTTTCGGTTTAATACGATAGCCATCTCACAAAATGGCACCTGGATAGGTAATATTTGGCTGATTACTGAAGC | |||||||||
gi|222372279|gb|GH732447.1|GH732447 OV.107O12R010429 OV Triticum aestivum cDNA clone OV107O12, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GGACCGAGCGACGAATCTTTCATTTTATTGATGACCCAATATACATTCAGAAACTATCGAGGCACCTCTCTATTTTCTCATAACAGTTTACACCGAGATCTGCAGGATTCAGAACTCAGAGGCACAAAAAATCATCAGGGAGGACAACAGCATTCACATCGCAAGAAGCTACTTCCCTAGAGGCGAGGACTAATCAATCGTGTGTCGTTTCCGTTCTCTCTTTAGAAGCATCGATCAGAAGGACGGGAAGAACTTGTTGAGGTTGAAGGGCAGGGAGTAGAACTCCTCGCTTCTCGGGTCTGTCTTGAAAGACCTGAACCTGTCCCAGAAATGGTGGCCCCGGTCCTTACTGGCGGTGCTGTCGTGCCTGTGCAGGGTGCTGTCCAGGAGAAGGGCGGTGGCGCCTCCGACAAACGCTTTCGACGAGAACACCACGTTGATCATGTCGTTGAACTGGCAGTGAGGAAATGAGAAACATCAGGTGTCAGTCTACATACGGAGCCAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTGGTAGCCATTTGAAATCACTACAAAGACAAATATTTTGGCACGGAGGGAGTATTCAGCATGTGAAAGGAGGATATATTCAGGAACCGGAGTTAAACCACA | |||||||||
gi|143800401|gb|CJ966322.1|CJ966322 CJ966322 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul40m2 ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): TNCCCTCAAACGTAGCAATTCCATTCTATCCAGCTGCTGCTGCTGCCTACTGGGGCTGCATGGTTCCGGGAGCCTGGAACACTCCATGGCAGCCGCAGCCGCAGCCACAGTCTCAGTGTCAATCTAACTCACCACCTAGTGCTGCTTCTCCGGTATCGACAATGTCCAGTTGCTTCCAATCCCGAAAGCATCCTAGAGATGGTGATGAGGAAAGAGATACCAAGGGTAATGGCAAGGTGTGGGTGCCCAAGACGATCCGGATCGATGACGTAGATGAGGTGGCCAGGAGTTCTATCTGGTCACTTATTGGGATCAAGGGCGACAAGGTGGAGAAGGATGATGGCAAAGGCTGTAAGCTTGCAAGGGTTTTTGATCCAAAGGATGAGGCAAAGACGTCAAGCCACAGAGGTAACAATAGCTTGCCATTCTTGAAGGGGAACCCAGCTGCACTGTCGCGCTCAGTGAACTTCCAAGAGAGATCTTGAGCACCATCTGGAAATTCTTCATGCTGCCTTCTGCTACTATAAAACCATGTAGCATGATACAGCTGAAATTTTGTACATTAGATAATTGTATACTACTCCCTCTGTCCCATAATATAAGAGTGTTTTTTAGACTAGTGTACTGTCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACTAGATAAGAGACATGGAGTGTTCAACATAGCTATAATCAGATCC | |||||||||
gi|222364262|gb|GH724102.1|GH724102 G468.104M08F010809 G468 Triticum aestivum cDNA clone G468104M08, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGGACGTCGAGCACTAGATTGTTTTTAATCTCTCACTGCCTTGGTAATTACTACTCCCTCTGTAAACTAATGTAAGAGTGTTTAGATAACTAAAGTAATGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGAGATGTATCTAGATGAATATTAGCTCTAGATACATCCCTTTTTATCCATTTTGATGGCCAGTATTTTCGGACGGAGGGAGTATAAGTCTGGATCCCTAAGCCACCACTCCACTTTTGACACCAAGAAAGCGGAATAATGTAAAGGTTCTTCTTTGCTCTTTTGTTGGATGGCTTGTCGTAATAATCCTGGGAACTGGTAATGGTTTTTATTTCAGTTTGTAATCTATACAACTTCTGGTGTGGCGAGTATACCACCTAACTTTTGTCTTTGTTATTTTTAAAGTAGAAATCGAGAGATGTAAATG | |||||||||
gi|222364414|gb|GH726526.1|GH726526 G174.109C02R011122 G174 Triticum aestivum cDNA clone G174109C02, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GGCAAAAAAAAAAAACTGGGCTTCATAGTCCACAGTTGAAGAATACAGAGACAATTCTCTGGCTAATTCTCTGTTATGTTTAACAGATGAAGAATTCGAAGGCATCTTACTAATCAGATCAGCAACTACTTCCTCCGTCCCATAATGTAAGACGTTTTTTGACACTAGCATAGTGTCCAAAAACGTCCTATATTATGGGACGGAGGGAGTAATATTCATGACACTCATCCTCATACATAGGCCAGGCATGTCTGGGTACAAGTTTTGTGGTATTACTTCCGTTTCACATATTACCACCCATCACGTGAAACTAGCTTTAACAACATTTCAGACATCTCTTAAAATCAGACCGCGGCTGACTTCTGCAGGTTGCCCATTCCAAACAAATTCTCGAACAATTTCGAAGCCATTGGAGGAACCGTCATAGGCACCGGGGCCATGAAATTAGCAATCTTCTCGTGAACGCTGTACCTTATCTTTCTGCTCTTTGAAGCGCGGCGATCGACGAGTTTCCTCTTCTTGTTCTGCTTCTTCCTTAGAGCATAAAATGCAGACTCAGATGCTCCATTATCACATGACTCGAGAAACTCCTTGAGAAGTTGATGGTAAAATTCAGAATCATCAATAAGTTCAGGATCACCTTCCACATCCTTCCCCTCAACGGTAGTAGCAGGCTCTGCTGCACTCTCCCCGAATACACCAAACATCAGATTCCCCAAGTAAT | |||||||||
gi|222364046|gb|GH725064.1|GH725064 F1.111D19R010702 F1 Triticum aestivum cDNA clone F1111D19, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GGAAAAAAACATAGTAATTGGCAGAATTCCATGCAATCATGCATGTTGGTGTGCGTGATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGGATAAAAGGGAATGTATCTAGACGTATTTTAGTTATAGATACATCTTTTTTTATCCATTTGGATGACAATTTTTTTCGGATGAAGGGAGTATAATGGTAGTTACAGGAATAATTTAGATGGATTCGTCGTCCAATTATGGCATACCAGATCAAGGTGTCTACCTAGGCCTCAAAGCTTTCCATAAGAATACTGGCTAAGTGAGCGTCTCAGAAAAACCATGGGTTGGTATGTAGTCACTGGTGGGAATCTCTAAAAAGACTTATATTGGGGAACGGAGGGAGTAGAATGAAGACAGTTCCTTGCCAGGGAAAATCACAAAATAAAAATAGTGGCAGCCAATAACACCTTTCGGTTCTTCCTTAACAAAAAAAGTCATTATGGGCTAACTTATTTCGGCCATCCAAGTACACTGGGACTCATCTCCTTCCGGGGTACTGGTGAACATCAAGCTCTGATCACTTTGCAAGTTCCACATAATCAACCTATCCCGGGATCACGAGTCAAAAGACAGCAGCCAACACCGGGGCCAGCTGATGGACGACATGACCACCTAACTGAGGCANCATTGCGACGGGAACCCTGGGCATCGGCCCAAGAAAGG | |||||||||
gi|222365835|gb|GH726155.1|GH726155 G118.114M16R010926 G118 Triticum aestivum cDNA clone G118114M16, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): CATACCCAATATGTTTTTTTTTTTTTTTTTTGGAATTAAAAAGAAAGGTATTTAGATGTATTTTAGTTTTAGATACATCATTTTTTTTCATTTGGATTACAAGTATTTTCGGACGGAGGGAGTACGTACGAATGCGAAAGATTAATAGGGGAGACCATTATTCAACCAGGACTACAGTAGTAGCAGGGCAGGCGAAACACAGGTATCGTAGCTACAGGGGTATTTATTCAGCCATGAACTCCTCCGGCGAACACTTTTCATGCCATCACTTCACGCCAAACCGCATGCACGCGTCGCACCATCGGTTCGCCCGCCGGTCGGTCGCTCACGGTATCTGGTCGCAGTCGGGGGGGGGGCTGACGGGGATGGACACGCCGCCCTGGCAGAGCGCGGGAAGCTGCCGGGCGCGGACCGGGAGCACGCCGAAGGACGGGCCGGATTGCTCCAGGCACCTGCAGAGCGCGCGGGGGCGCGCCCGGGGTCCCCGCCATCCCTCCGAAGACCCTGAGCGCCCGCGGACAAACACCAACCGGCACCCCCGGGGAAGGAGCCCACCCAAAAACAACCCGAAGGGGAACAACCACACACAAAGGCGAACCAGAAACAACAACAAAAAACAACACACACGGACACCAATGAACAAAAGAAAAACACCACGCCAAGGCACAAACCAAGCAAAACAAAAACAAACATAAAAAAAAACAAAACAACAAACACACAAAAAAAAAACAACAAAAACAAAAAAAAAAAAAAAAAAAAAAACAACAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGAAAAAANAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAACAAAAAAAAAAAAACAAAAAGAGAATAACGATAA | |||||||||
gi|222370498|gb|GH729761.1|GH729761 G750.106K06R010801 G750 Triticum aestivum cDNA clone G750106K06, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GCTAAGCTGATTTACTTTATTGCAAAGTTGAATTTACGTAGAGTGTGCACAAATTCAACCAACAAGTCGTCTCTTCGAAACACACATAAAACATACTCCCTCTGTCCCAAAAATGTCTCAACTTTTAGTAACATTAGTACTAAAGTTGAGACACTTGTTTTGGGACGGAGGGAGTATATGGTAGGTGCTACCATGCCCTTGCTCAGGCAGGAACTTCGTCGGATGAAGGGTACGTCTGAAGAACATAAACCGGGTCGCCGACCTTGACGATCCTCCCTTTTCCCTTTGCTGATACCGATTCCTTGCAGACCAGATATTGCCCAAAGTACACCTTGTGTTTATTCTTGTGGCTCGGACAGATCACTTCACCGGACCGGAATGTCAGCATAGTTTCTGTTGGTTCGGTGCCAAGTATTCATTCTCTTGATTAACG | |||||||||
gi|143798093|gb|CJ964016.1|CJ964016 CJ964016 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul34d1 ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): CTNTGAAAACCCTTTCGCTGTCCAGGAAGAAAACGACCATTACAGTGCTCAATCTGCCGAACAAGGGGACAAGGATGACATATACCAGTTCGNCCAAATTCTTCTTGAAGTGATCACAGGCAAACCGACGGCGTCCCAAAGCGAGTTGGAATCCCTGAGAGCCCAGCTAAGCGAGGCCCTGGCCGAAGACCCGGACATGCTGAAAGACATGGCCGACCCGACGATCCGCGGCACATTTGCGGTGGACTCCCTCAGCAAGGTGACCGAAGTGGCCCTCAACTGCACGGCTGGTGACCCGAGCGACCGGCCTTCCGTCGACGACGTGCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGCTGGGCGAGCAGCGAGAGCTTAAGCTTGAGCGTGAAATCACAGGCGTGAGTCAGTGCAATGCTCTTTTGTAGCGGTGCACCCTTATGGCTGGCCTTTTGCTGTGAAAGGGAGAAGCAAATGTTACTTATCCCCCGTATATAGAAGTGTGCCACTCCAGAGCATGGGGAGTATTTCTTGTTTGTCGTCGTAAACTCCAGCACTATTAAGTCCAAACCATTAGAAAGAGATCACTAGCTTTTCTTGTTTTTTTTGAAAGAGATAACTACTTCTTATATTATGGGACGGAGGGAGTAGCTTATTTTCTGCTGTTTGTTGTATAAACAACCAGGACCTATCCATGTTGAAACCATTAGATCACTAGCTTATGCTGACATCNNTGCTATCTAT | |||||||||
gi|143800537|gb|CJ966458.1|CJ966458 CJ966458 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul4d20 ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GCGATCAGCAGCGGGGCCGCTCCTGCGCGAGGCCATGTCGACGCCCGTGCTGATGGTCACAGCGGAGCAGGCGCTGGTGGAGGTTGAAGGCCACTTTCAGCTCGTGTCAGGCCTCCCGGTTGTCGACAGCGCTCGCAGATGCATCGGGGTCGTCGTCAAGAGCGATCGTGTGAGGGCTTCACATGGGTCGAAGACGAAGATTGCAGATGTGATGACATCTCCAGCAATCACGCTATCATGCGATAAAACAGTGACCGATGCCGCAGCTCTGATGCTCAGGAAGAAGATCCACAGATTACCGATAGTAAACCAGGACAATCAAGTAATAGGTGAGTAACAGAAAACACGACAAAACCGGCAGTAATGTAGTGTTTTTTACACTAATGTAGGAGCGTTTTTTATACTACTCCCCCCGTCCCATAATATAAGAGCGTTTTTTACACTAATGTAGTGTCAAAACGCTCTTGTATTATGGGACGGAGGGAGTAGATCTGTATCATCCCCTTAACATCGACTATTGTTTGGAGTATGTTTCAAGCTTAACAGGATATTCTAAACACTGCTAACAGGTATAGTTACCCGCGATGACGTTCTTCGCGCGTTGGAGGCCATGCTGAAGTTTTAGTGATGCAGGAGTCCATGCCCGGTACTTGTGGATTTTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAGCAGGCAGATCTATAGTCTGTAAAAGTGTAGTAGCCTGTATCGCAAAAATAAGCCTGGGAACTTTTAGGAGAGCTTTTCCTTGTAAAGAAGCACGCCCGGAAGCTTCTGCTCTGT | |||||||||
gi|158029372|gb|EX567357.1|EX567357 Z709 SSH-cDNA Library of powdery mildew infection in leaves of powdery mildew resistant vari ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): ACCTACTTTTTTCTATAAATATGGTCAAAGTTTGTAATGTTTGACTTTTGCAAAAATCTATAGACACTATATTATGGAACGGAGGGAGTACTAGTGCACAACTTAAAGCAAGGAATCCAGGCTCGCACGAACAGAAGCGCAAGCGGACTCCTCGTGCTGCTGAAACTGAAAGCGTATACACGAACGAACTAGACGAGCAGATGATCACCCACCCACGGGAGGTCTCTTCTCTTGAATGGAATCATCACCGGCAT | |||||||||
gi|222369095|gb|GH730827.1|GH730827 G750.121A05R010806 G750 Triticum aestivum cDNA clone G750121A05, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): GACACTACAAAAAATGCTCTTATATTATGGGACGGAGGGAGTAGCATACTGCTCAAAGTCTGTAACCAGTCATTAAATAGGCATGCCCATTAAATGAGTTCCAACCATACCCTCCTTTCAACTCTCAGTGACTCTGCAGTCTAACAGACGGACACAACACGACGATTGCAAGTTTGCAACACCCTTTCCGTTAGCTAATGGCTTTCTGCGCCAAGAACATCCATTGTGGCAGCCAATTCACCTGCAAACTATTCTTAAGGCTTGATCCTTGCAGGATGACTGGTTTGAACCCCTGGGCTTCGGAAATCCTTGCATTTGGTACTCCAGGGAAGACATAGCTGCATTCTATTAAGTACATACACTTGCCTCCAGTTTGCACATTCCTTTTGTTATACCTATGATGCGCCTCTGCATTATCCAGCCCTCA | |||||||||
gi|222366760|gb|GH727106.1|GH727106 G356.113D22F010920 G356 Triticum aestivum cDNA clone G356113D22, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGAAGGTAATGGTGGGTGTATGATACCGGCGAAAGGTGCGCGGTATTAGAGAGGCTCGCAATGGTGGAAGGGTGAGAGTGCATATAATCCATGGACTCAACATTAGTCATAAAGAACCCACATACTTATTGCAAAAATCTATTAGTTATCGAAACAAAGTACTACGCGCATGCTCCTAGGGGGATAGATTGGTAGGAAAAGACCATCGCTTGTCCCCGACTGCCACTCATAAGGAGGACAATCAATAAATACATCATGCTCTGACTTCTTAACATAACGGTTCACCATAGGTGCATGCTACGGGAATCACAAACTTCAACACAAGCATTTCTCAAATTCACAACTACTCAACTAGCACGACTCTAATATCACCGTCTCCATATCTCAAAACAATTATCAAGTATCAAACTTCTCTTAGTATTCAATGCACTTCATATGAAAGTTTTTATTATATCCCTCCTGGATGCCCATCATATTAGGACTAAATTCATAACCAAGGCAAATTACCATGCTGTTTAGGACTCTCAAAATAATATAAATGAAGCATGAGAGTTCATCTATTTCTTCAAAATAAAACTACCGCCGTGCTCTAAAAAGATACTTCCTCTGTCCCAGAATATAAGACGTTTTGACACTATGCTAGTGTTAAAGACATTCTTATATTTGGGGACGGAGGGAGTATAAGTGAAGCACTAGAGCAAATGACAAACTACTCCCAAAGATATAAGTGAAGATCAATGAGTAGTCGAATAATAATGCAAATATGTG | |||||||||
gi|222367349|gb|GH731872.1|GH731872 OV.002G19F010109 OV Triticum aestivum cDNA clone OV002G19, mRNA sequence ANTCCCTCCGTCCCATAATAT EST sequence (targeted fragment marked with yellow): ATGCAACTAACCGTGATCGCCTTTTGGTTTGATAGGGTTTACCACTTCAGTAGTTAGTTAGATTTTTCTATTGTGGTACCATTTACATGGACACTAGTACTAATCCTAGTTCTTAGATTGCAGAGTACCCCTTATATCTTTGTATATGTGCAGCTCCTGCCCATGGAAATCATGTAGAATGGTACTCCCTGTGTCCCAAAATTCTTGTCTTAGATTAGTCTAGATACGGATGTATCTAATACTAAAACGTGACTTGATACTTCCGTATTTGGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATATGTGGACCATCCTGTTATGGTTTATTTTACCATGATATTACTAAAATGTTGTACTTTAGTGGCATGTTCTACATTTAGACAGCTAATGTTACCTGGC | |||||||||