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mature miRNA: ATACTCCCTTCATCCCAAAAT
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|222364046|gb|GH725064.1|GH725064 F1.111D19R010702 F1 Triticum aestivum cDNA clone F1111D19, mRNA sequence 

ATACTCCCTTCATCCCAAAAT
||||||||||||||| ||||
TATGAGGGAAGTAGGCTTTTT

EST sequence (targeted fragment marked with yellow):
GGAAAAAAACATAGTAATTGGCAGAATTCCATGCAATCATGCATGTTGGTGTGCGTGATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGGATAAAAGGGAATGTATCTAGACGTATTTTAGTTATAGATACATCTTTTTTTATCCATTTGGATGACAATTTTTTTCGGATGAAGGGAGTATAATGGTAGTTACAGGAATAATTTAGATGGATTCGTCGTCCAATTATGGCATACCAGATCAAGGTGTCTACCTAGGCCTCAAAGCTTTCCATAAGAATACTGGCTAAGTGAGCGTCTCAGAAAAACCATGGGTTGGTATGTAGTCACTGGTGGGAATCTCTAAAAAGACTTATATTGGGGAACGGAGGGAGTAGAATGAAGACAGTTCCTTGCCAGGGAAAATCACAAAATAAAAATAGTGGCAGCCAATAACACCTTTCGGTTCTTCCTTAACAAAAAAAGTCATTATGGGCTAACTTATTTCGGCCATCCAAGTACACTGGGACTCATCTCCTTCCGGGGTACTGGTGAACATCAAGCTCTGATCACTTTGCAAGTTCCACATAATCAACCTATCCCGGGATCACGAGTCAAAAGACAGCAGCCAACACCGGGGCCAGCTGATGGACGACATGACCACCTAACTGAGGCANCATTGCGACGGGAACCCTGGGCATCGGCCCAAGAAAGG


gi|222367445|gb|GH730358.1|GH730358 G750.115E21R010802 G750 Triticum aestivum cDNA clone G750115E21, mRNA sequence 

ATACTCCCTTCATCCCAAAAT
|.||||||||| |||||||||
TGTGAGGGAAGAAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
GTCGCAAGGGTTAATACCAGAGTAGGAAAAGTACAACAATAACTGGGTGTAAATGATCTTATACATACAAATAGAAGAACAAAACAGAAAGGAAGTACATTTTATTTAATACTTTTACATGGTATGCAAAAACTCTGGACCATTCATAAGTAATACTCCCTCTGTAATTTGAACTGAAACAACGACAGTTATTTTGGGAAGAAGGGAGTGTTATTCATCTTGCACATGCCGACAGGAAAGAAGTTGTTCCATCCGACAATCTTTTTGTATGCAAGAATAGTCCTATTTCCACCTCCTGTAGATTTTATGCAAAAAGGATTTCAACACTGCTTGTACAGCTTCATTAGGCTGCGCTTCGATGTCTGAGATCAGCTTTTCATAAGTCTCACTTTCATACTCAGAGAACACCCTCTCGAGATTGAGCTCTTTATACAGAGCCTTCACTTTTGCGACGCAAGCAGGATCTGACTTCCCGTAATTTTCAAATAGGATGTCTTTTGGCCTCTCATCGACACGTACTAGGGCTTGAAAAAGCAGCCAAGAGCACTTGAAGTCTTCAATATCGGTACCA


gi|222366097|gb|GH729095.1|GH729095 G750.001B02R011130 G750 Triticum aestivum cDNA clone G750001B02, mRNA sequence 

ATACTCCCTTCATCCCAAAAT
||||||||||| | || ||||
TATGAGGGAAGCAAGGCTTTA

EST sequence (targeted fragment marked with yellow):
CGCCGGTGAGGGAGCTCCGGACCGCGGCGAGGGAGCTTTCGATCGCGGCGGGGAAGGGCGACCAGAGGGGATCGAGCTCTCGATTGGAGCGGCGCAGGCAACCGGCGGGGAAGGGCGCCGGAGATGTGGACGACGGAGGAGCCTGGCGAAGGGGAGGAGCGACGGAGTCCTGGCGGAGGGAAGGAGCAACGGAGGAAGACGACGGCCCGTGCGATTTCAAGTTGGTGGGTGGGGGAGGGGCAGTTTGGTAATTTCACTCGTTTTCACCTGGTCGGAAAACCCCTCCAACGACAATTATTTCGGAACGAAGGGAGTATATTTGAGTGAGCATGAACCTCAATACAAATAGAAAAGAAAGAACATGAACAGTAAAATCATATCTCCGCTCAATTTTTTTATTCCAATGGATAGCAAGTAAATCTGCTTACTTATGCAATTATGTTCCTTTAAAAATTAATGGATCAGAAAATTTAAGCAAGTAAAACCTGAAAAGCCTTCTTTTCTTGTCCCATCTCGTTTAACTTCCGTCTCATAAGCACCTGAAAATGGTTTCATCTCCGCGTTCAGTAATTTAAATTTGAAAGGGTATAATTAAATGTCCAGATGGAACAAAGAGCAGAATAACAGAGCACAATTTTGACTATTAGAATCATATATGTCAGTTGTGGTTACCTTTGAACATGAAGTTACATGGATGGAGGAATGAAGATATTCAGAACATAGGTCTAGCCAGACAAGTGTAATT


gi|177815248|gb|FF339658.1|FF339658 PST_C14 Transcript derived fragments (TDFs) from wheat leaves inoculated by stripe rust fung 

ATACTCCCTTCATCCCAAAAT
|||||||||||||  ||||||
TATGAGGGAAGTAAAGTTTTA

EST sequence (targeted fragment marked with yellow):
GCTTGCATGCCTGCAGGTCGACGATTTGTAGACTGCGTACCGACAACAAACATAACAAGAGGATCAAAGTAAACAAAATATCATGCAACGAAGACCAGTATAATTATTACTTCCTCCGTCTTAAATTAAGTGACTCAATTTTATACTAACTATAATATAAAGTTAGTATAAAATTAAGTTACTTATTTTGAAATGAAGGGAGTATTAGCTTCGGTTCTCGCGGCATCTTCAGACTTCAGTGCTGAGCTCCAAGACTCGCAACATCGCGTCAACGATGGACTTCAGTTACTCAGGACTCATCGGTACGCAGTCTACAA