| mature miRNA: CTGCATTTGCACCTGCACCCT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|239862083|gb|GR304297.1|GR304297 WRIS_4360 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis CTGCATTTGCACCTGCACCCT EST sequence (targeted fragment marked with yellow): CGGGATTCGGCCATTACGGCCGGGGGAGCTGGAGACTCGCCAAGAACAGCTCCTCGGTTGAGAAGAGCTACGAGCTTCCTGATGGTCAGGTGATCACGATTGGCGCAGAGAGGTTCAGGTGCCCTGAGGTCCTCTTCCAGCCATCCATGATCGGCATGGAGTCTTCTGGAATCCATGAGACGACCTACAACTTCATCATGAAGTGTGACGTGGATATCAGGAAGGACTTGTATGGCAACATTGTGCTCAGTGGTGGCACAACCATGTTCCCAGGTATCGCTGACCGTATGAGCAAGGAGATCACCGCCCTTGCCCCGAGCAGCATGAAGATCAAGGTCGTCGCTCCACCTGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATCCTAGCCCCACTCAGCACTTTCCAACAGATGTGGATATCCAAGGACGAGTACGACGAGTCTGGCCCGGCGATCGTCCACAGGAAGTGCTTCTGATCTCCACGAAACGCTGCGCCGCCGTTATCATCTAGTCTCGGGTTATGTTTGGTTCATTCTTCTAGAAATGTATTGCGTATTTGCAAGCTATGTTTTTTTTCCAGACGTGACGTGAGTACTCTCGGGATATGCCGCCTATATACGTGGCGGCTCCATGGTGCAAGTGCAAGTGCAAGTACACTATATCTATGTTTGTGCATTGTCACAGTGTGTTTGTGAGATCAGTTGTCAAACTTGGGTTGGCTTGATTTGTTGTTGGAGTTGTCTGTAATAGCTCATGGTTTTTGCTATGTACTATATCTTATC | |||||||||
gi|197283621|gb|FL646044.1|FL646044 sTaPST33 Transcript derived fragments (TDFs) from wheat leaves challenged with stripe rust f CTGCATTTGCACC-TGCACCCT EST sequence (targeted fragment marked with yellow): TTTGTAGACTGCGTACCGACACCGAGGAAGGAGGGCTGACTGTCAACCCCGACTTCTTTGTGGATTTTGGCACCGAGCCTGAAGGTCCCTCATTGGCCCATGAAATGAGATATCCTGGGGGAGACTGCACCTCTGACATATGGATCTAGGACGAAGGGTGTAGGGTGCATATGCAGCTGGAGATCCATGGTGTTACTCAGGACTCATC | |||||||||
gi|143794966|gb|CJ960894.1|CJ960894 CJ960894 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul24k0 CTGCATTTGCACCTGCACCCT EST sequence (targeted fragment marked with yellow): TTCAGACATGACTGCTTGCAAGCAGACCACATCCCATGGGCGCTGCCGCCAGGGACGAGGCCGATAGCAAGTCGGCAGCGAAGAGAGATGGAGCGGAGGAGCGGAAGTCCTCGACCAAGTGCAGGAAGGGGAAGAAAGCCAAGGGCAAGTTGGCGGTGAAGAGCAATGGTGCGGAGAAGCCCAAGACCCATGACCTTTCCGATGTTACACGCGGGTTGGCGGTGATGAGCATTGCAATGGAGAAGTCGTTGGATGAAGAGCTCGCCCAGCTCGCCCTGTTCACCTACCAGAACATCTTCTGGATGGACAACTTCAAAGGCGTCTATGACAAGCCGTCCGTAGATGCTATTAAAAGGAAAGCTGCTGAAAACTGGAAATTCTTTAGCGATTCGGACAAAGCCCCTTATGTAGCCATTGCACGTGTGAACAGAATACTCATTGCTGAGGCAAACGAGTTCAAGAAGACACTGAAGTTGACGCTCGCGATGACGGACAAGATGATGAATCTGAAAATGTGAACAGACAAGATCTTTAAGATGTGTTTGAATAGAAATGTCTTGTTAGATGGCAGAATTACTGCAACCAACTCCACAAAACCTGATTCTGTCTGAGCGGCACTTGGAGGGTTGAGATGCAAGTGCAGTTCAAGCTTCCCATATGGACAATACTAGTTTAAAATACGTTTGTGCTCCTGGCTTTAGATGTTGAAGTCTTTTGCATATTGTTATGTTTGGTTAGTAAATTTGAATGGCCGTTAAGTTATTTCACTACTAAGCCCTGTGATGACATTGTGAGAATGCAAGGGGCTGACCCCTACCAAGAGGGGGCATGTTGTATTATGTACTACTAACCTCGTGAGATGTACATTGCAGTATTAACTATGAAAT | |||||||||
gi|143800882|gb|CJ966803.1|CJ966803 CJ966803 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul5f17 CTGCATTTGCACCTGCACCCT EST sequence (targeted fragment marked with yellow): GGGACATCAAGGAGAAGCTTGCGTACGTAGCCCTTGATTATGAGCAGGAGCTGGAGACTGCCAAGAACAGCTCCTCGGTTGAGAAGAGCTACGAGCTTCCTGATGGTCAGGTGATCACGATTGGCGCAGAGAGGTTCAGGTGCCCTGAGGTCCTCTTCCAGCCATCCATGATTGGCATGGAGTCTTCTGGAATCCATGAGACGACCTACAACTCCATCATGAAGTGTGACGTGGATATCAGGAAGGACTTGTATGGCAACATTGTGCTCAGTGGTGGCACAACCATGTTCCCAGGTATCGCTGACCGTATGAGCAAGGAGATCACCGCCCTTGCCCCGAGCAGCATGAAGATCAAGGTCGTCGCTCCACCTGAGAGGAAGTATAGTGTCTGGATCGGAGGGTCNATCCTAGCCTCACTCAGCACTTTCCAACAGATGTGGATATCCAAGGACGAGTATGACGAGTNTGGCCCGGCGATCGTCCACAGGAAGTGCTTCTGATCTCCACGAAACGCTGCGCCGCCGTTATCATCTAGTCTCGGGTTATGTTTGGTTCATTCTTCTAGAAATGTATTGCGTATNTGCAAGCTATGTTTTTTTTCCAGACGTGACGTGAGTACTCTCGGGATATGCCGCCTATATACGTGGCGGCTCCATGGTGCAAGTGCAAGTGCAAGTACACTANATCTATGTNTGTGCATTGTCACAGTATGTTTGTGAGATCAGTTGTCAAACCTTGGGTTGGCTTGATTTGTGTG | |||||||||