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mature miRNA: GCTTAGATGTGACATCCTTAAAA
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|239860773|gb|GR303066.1|GR303066 WRIS_1241 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis

GCTTAGATGTGACATCCTTAAAA
| ||||||||||||||| ||||
CCAATCTACACTGTAGGTCTTTT

EST sequence (targeted fragment marked with yellow):
AACCATCAAATTTACCCCTTTATCTCAATTACTGAATTATTCTAAATTATTTTAATTACTTTGTTTATGCTAGCTGTATGCAAGTGCCACTGTTCTTCAGGGACTTAGCTTTTGCAATGTATTTCCAACACTAGTGATGTGATGCTAACTTACATTTTCACTGAATGTCAGGGTGGTGCCAAGAAGGTGGTCATCTCTGCCCCAAGCAAAGATGCCCCTATGTTTGTGGTTGGTGTCAATGAGGACAAGTACACCTCAGACGTTAACATTGTCTCAAATGCTAGCTGCACCACTAACTGCCTTGCTCCCCTAGCAAAGATCATTAATGACAACTTCGGTATTATTGAGGGTTTGATGACCACTGTTCATGCCATCACTGCCACACAGAAGACCGTTGATGGTCCCTCGAGCAAGGACTGGAGAGGTGGCAGGGCCGCAAGCTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAGGTACGCCACGAACAGCATATTGTGCATTTGTTTTCAGACACTGTTTTGAATGGACTGCTCACTTTTTCAGTTTGTCTAATTCACATCTAAATGTTTTCTGGATGTCACATCTAACCTCCCGCAAATAAC