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mature miRNA: TAATACAAAGTTGAGTCATCT
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|222371431|gb|GH732851.1|GH732851 OV.113J09F010313 OV Triticum aestivum cDNA clone OV113J09, mRNA sequence

TAATACAAAGTTGAGTCATCT
|| |||||||||||||||| |
ATCATGTTTCAACTCAGTACA

EST sequence (targeted fragment marked with yellow):
ACATCCTCCGTTCCAAAATACATGACTCAACTTTGTACTAACTTAGTACAAAATTGAGTCATCTATTTTGGAACGGAGGGAGTACTTCAGAATCGATGGCTTGAATTAAGTTGGCATGCTACCTGAGGATTGAAATAATGTGTACTATTAGATTTTGCTGTTTCAGATTGAACATCGATTTATTCACAGGAAAAAATAGATTGAACATAGCTTTACTGTAGTATTACATTCCAACATACTTTACACGCTCCTAAAAAATCAAGTGCAAAATTACATTAGAGGGGAAATTCAGTAATTGGTTTCTGAAACTAAGTGACATGCACATGTAAAGTTTGTTTGCTTGATGTGCTTTGTATGCATACGTATTGTAGCCATATATATCAACATGTGACAATAGTATTGCGTTTGCCTTGAACACTAAATTCAGTCTTTCAAAAAAAGAAATTTTGTAGCCATAGTCAAGTCTGCTGCCCTGTGCATGAACCAAACACAACATTAGCTTCCTTTTGAATCCTGAAGGCACCAACTACAAATTATTTTAGTGTACGAAAATCAATCATCAAAGTTGCAAAATTGTGTGATTACGAGGAATCTCGTTTCTTAAACATGTGCATCTTTAGAAAATTCTGTATTCATTAATCATTATGAGTGCACAAATAACCAGTAAAATTGTTCTACATGAAGACCAGAGAAG