| mature miRNA: TAGATACATCCATATCTAGAC species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222372165|gb|GH732781.1|GH732781 OV.112I01F010313 OV Triticum aestivum cDNA clone OV112I01, mRNA sequence TAGATACATCCATATCTAGAC EST sequence (targeted fragment marked with yellow): ATGAAAACCAAGGAGAGCAAGGGTGTAATCTAAAGATATGTTGATGTGTTTTGGGCATTTTCTATTTATGTTGTACTCATGTACTGTGTGGTACCGTCCGGCAGTGAGGCTGACTATGGATGTATCTATGCAGTGCATTTCCAGGATCAGGTGTTTCGATGTAGAATTATTGTTATTTTCACGTGATTCATGGCCCCACCTGGTGTGTGTGATGCCGGTGACTAGAGTGGCATGCCTGAGACTGAATTGCAGTGCTTCTATGTGTTATCTGATACTGAATTCTGATGCATGTTCAGGCAGACTTGTGGCGCTTGTTTGTGTCGCGTGAAACTGAATTGTGCCACCTGAAGTTGTATAGAGAATATCTAAAATAAGTGGAATCAGGGGTGATGTGATC | |||||||||
gi|222362142|gb|GH723989.1|GH723989 G468.100A19F010614 G468 Triticum aestivum cDNA clone G468100A19, mRNA sequence TAGATACATCCATATCT-AGAC EST sequence (targeted fragment marked with yellow): CCACGCGTCGCCCACGCGTCGCGAGGAAACTGGAAATTATCTGGATGAGGTTCTAGTTTCGATCGAAGGCACTTCTTCACAAGTTCAGACCGCGCATCAACTCATACAGGAGGTCCTACTGGGCGACGGAAAAGTTCTACCACCCAGGAGCAGCAGCTACGGCAACCCAGAGGCTGGCCCGGTCAGGCCGCCGTTCGCCCCGCGCGGCGCTGCTCCGGCGAGTCCGGAGTACGCCCCGCCTCTGTACCGCGACTACCGGTCGTTGTCCGGGAGCGTCCGCCACTGCCACTCTGCTGCTTACCACGGGTACAGGCTGTAGCACGCGGAGCCGAGCGACTGACCGCGCGCCTATCCTCCTCATCGCCGCGCCTAACCTAACGATCACCACCCGGACCATGCCCGATTAAGCAGGAATTGAATGGAACGGCTTTGCCGTGACGATTGATCGTTTTGGGGGACGTGATAGTTTCCAATGCCGGCTTGTGATGTACTCCCTCTATTCCGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAACATACATCTAGATACATCCATTTCTACGACAAGTAATT | |||||||||
gi|143798908|gb|CJ964829.1|CJ964829 CJ964829 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul36n1 TAGATACATCCATATCTAGAC EST sequence (targeted fragment marked with yellow): CCATAGTTNTTTCAGAAGAAGCCTGGAGGAGAACCTGAACAGCAGGAGTTGACATATGCTAGCCTGCAGGAAGCTATTTCTGTGCCCTGGAAGAATCTGCCCAAGAAAACANCTAAATTGTACTACGCCATGAGAGTCTNGGAAAGTTATGAATTATCTGAAGGGCGCAATCCTGGTGAGACAGGACTTTNTGATCTACCTGCAGTTTTGGCTTGGAGGAAGGATATGTGTGATAGAANGTCTTTAAGTGAGTCTCAAATTCNTACGGCTCTCCTGGAACGGCTTTTAGCAGCTGGAAAGAAGGAACATCCTCCTGTATGTGCAATCCTTGGTGGCATTCTTGGTCAGGAGGTGATTAAGTCAATATCTTGTAAGGGCGATCCGATCAAGAATTTCTTTTATTACGACGCAGCTGATGGTAAAGGGATCATGGAGGACATCCCCCCAACTCCCGTAGAGCATTTTGCATGATGTCTAGCTCGCATTGGTCATTAATCGCTGATTATTGTACCCAATCATTAGAGCCGAACATGTGACAACTTCTTATCATGGCTGCGGCAGAAAACTCATGTTACCTCCGTTCCATTTTTTTCTNGTCTAGATATGGATATATCTAACACTCGAACGTGACTAGATACATCCGTATATAGACAAATCAAAGACAGAATTTTGGGACAGAGGGCGTACTTAATATTTTAGCGTTGGCACCCCAGTATTGTATTGAACAGAATTGACATTCTCTTGATCTCCTCTGACCA | |||||||||
gi|143794430|gb|CJ960358.1|CJ960358 CJ960358 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul22n2 TAGATACATCCATATCTA-GAC EST sequence (targeted fragment marked with yellow): GTGTCAATCCAGTGGCGCTCATGAATGCTTCCTGAGCTCATGGTTCAGTGTGACCTGTCTGTCATTAATTGCTTTAGATCACTGTATGTTCTTTTTCGCAACGGAGGAAATTCTTCACTTTTACCCAGTATGATAATTGACATTGGCTAGTAGGTTCATACTGTTCTCTTAATCAAAATTGCAAAAGAGCAACCGGAAAAATGAAGAAATTGTTCAATCTATCCAGTATGAATCCATTATTGCACTCATGGCTGAAGATCAGACATCTTATGTACACATCTACACAATAGTGTTTCTAACTTTATTATTTACATTTGGTAGGATGATGCCGTTCCTAATCCTCTCAGGACAGCTTTGCCCGCCTGGAATCGAGGGCACACTGTTTGCTCTGTTCATGTCCATTAACAACCTCAGTTCGACATTAGGTTCATTCCTTGGAGCTGCATTGACGTCAGCTTTGAACATCTCGTCGGTACAGTTTGACAATCTGGCGCTTGGCCTAGCTGTTCAGCTGATGGGAACTCTCTTACCTATTGGATTTTTGTTTCTGATTCCAAGGGACGTTACAGGACTAACATCGGGTTACAGACCTGATCATCATTTTTTCTGGACTGGTCTGGTCTGTATTCCCTAGTCTTACTCATACATGCATATAGAGAAAGCAAATTGAAGCCAGCAGGAAGGTAGCTCAGTTTTGTTGAAATATGTATACAGCCATATACTCCCTTTGTTCTGAATTACTTGTCGCAGGTATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTCTGTGACGAGTAATTTGGAACGGAGGGAGTACTAGAATGAGAGGAAGAGTACAATAGCTGACATTATAAAGCGTTAAGCAATGGCGAAACTGTGTAGCAAATGTACTTGCGCGAAACATGTGTTANCATGGAAAGTGT | |||||||||
gi|222362143|gb|GH723990.1|GH723990 G468.100A19R010928 G468 Triticum aestivum cDNA clone G468100A19, mRNA sequence TAGATACATCCATATCTA-GAC EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGACCATCGCCGTCGTCGCCGCTCCCCATTCACCGGAGCAGTCTGGAAGCTCATCGCAGAGGACGAGTGCATGAGCATCGCCGCCCCCACCCTACCAGAATGGTGGCACCGGCTTGCCTGGGTTACAAGAAGGGGGAATGAACCAGCCAGGTAGAAGAGCAGGGTCGAAGACAGCGTTGGGCTGACACTAAAACATGCAGTCAAGGAGGCGTTCGGTTGCCATCTACAGCATTTACTCCCTCCGTTCGGAATTACTTGTCGTAGAAATGGATGTATCTAGATGTATGTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTCGGAATAGAGGGAGTACATCACAAGCCGGCATGGAAACTATCACGTCCCCCAAAACGATCAATCGTCACGGCAAAGCCGTTCCATTCAATTCCTGCTTAATCGGGCATGGTCCGGGTGGTGATCGTTAGGTTAGGCGCGGCGATGAGGAGGATAGGCGCGCGGTCAGTCGCTCGGCTCCGCGTGCTACAGCCTGTAC | |||||||||
gi|143802162|gb|CJ968083.1|CJ968083 CJ968083 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul9k20 TAGATACATCCATATCT-AGAC EST sequence (targeted fragment marked with yellow): TNTGCATGCAGGATGGCACGCCAACATGGAGAGGCAAGGACGCACCCCGGCGACCATGCCGCCCCTCATGCANCCAGGGATGACCCGNTGATTCNTCGATCCGTCCGTGCNTNTTCCTCTCANAACACNCNTCTAAANTGAGCGTCNTTGNGTAGTACTCCCTCCGTTNNGAATTACTTGTCTCGGAAATGGATGTATCTAAAACTGAAATACATCTAGATACATTCATTTCCGCGACAAGTAATTCCGAACGGAGAGAATACAAATAATCTCCATGCTGTTCGGCGTCTTTGCGGTGTCACAGCTTGCCTAGCTACTTGCAGGTTTCTGTACAATTAATACCAGTGTAACACAGAACTACCACTTTCCTGTAA | |||||||||
gi|222367349|gb|GH731872.1|GH731872 OV.002G19F010109 OV Triticum aestivum cDNA clone OV002G19, mRNA sequence TAGATACATCCATATCTAGAC EST sequence (targeted fragment marked with yellow): ATGCAACTAACCGTGATCGCCTTTTGGTTTGATAGGGTTTACCACTTCAGTAGTTAGTTAGATTTTTCTATTGTGGTACCATTTACATGGACACTAGTACTAATCCTAGTTCTTAGATTGCAGAGTACCCCTTATATCTTTGTATATGTGCAGCTCCTGCCCATGGAAATCATGTAGAATGGTACTCCCTGTGTCCCAAAATTCTTGTCTTAGATTAGTCTAGATACGGATGTATCTAATACTAAAACGTGACTTGATACTTCCGTATTTGGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATATGTGGACCATCCTGTTATGGTTTATTTTACCATGATATTACTAAAATGTTGTACTTTAGTGGCATGTTCTACATTTAGACAGCTAATGTTACCTGGC | |||||||||