mature miRNA: TAGTACAAAGTTGAGACATTT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|222367054|gb|GH731612.1|GH731612 GR45.111M18R010612 GR45 Triticum aestivum cDNA clone GR45111M18, mRNA sequence TAGTACAAAGTTGAGACATTT EST sequence (targeted fragment marked with yellow): GGAATGCATAAAAAACACAGAGAATCACACCTTACTTTATTATTAGTATAGTACATATAGATATAGATATATCTATCACGTAAGAAACAAGATCCTAATATAAGGTTTTTACATAACGCGGAAACAAAATAACAATTACTAAGTTATAGTACTCCCTCGGGTCTTAAATATATGTCTCAACTTTATACTAGGCTTTAATACGAAGTCTTGGGGAACGGTGGGCAGTTACGCAATTATAAAGGGTAGATGTAGGGCATCACGCGCGACGGCCTGAGCGGCAACTTCAACACCGTTTCGACACGGAACTGCACCTCATTCTTCAGCAGTCCTTGTGTCCTCGGAAGTCCTTGTGCTGGACTTTCCAGACTTCTTTTCTGCCAAAAACTTCTCGCAATTCCTTTTCCAGTGACCCTTGTCCTTGCCGCAAGAAGCACTCCTGTCCTCTTCACTAGGCCCGCGTCCAGGCTTCCCCTTGCGTGCCGGTCTTACTGACGCCCTTGCCATTCCGACTCTGCCCTTCTACCTCGAACCCACTGCCCTCCTCCGCCCACCATGACCGGCGCCCCACCCGGCATCCAAAACCCCGGCGAACCCGAACAATCCCGAACCAATCCCATACAGCCCTGGACCACCCGGCACACAGGCACCCCGGCCAAACCCACACACCCTGCGGCAACCCACAAGCCGAGACCAGACCAGCAACGGCGATCCAAAACCCAAAGCCCAAAGCCCCAGGGACCCACACTGCCCCTGTTGCCCGGCGCCCCTGGACACGGCCCCAGAACCCGGGAAACCAAACGCGGACCGGAAACAAACCAAGTCCCAAAA | |||||||||
gi|143799086|gb|CJ965007.1|CJ965007 CJ965007 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul37g1 TAGTACAAAGTTGAGACATTT EST sequence (targeted fragment marked with yellow): GGGTCATGGAGATGCACCTCGCCGGCGAGCTCGTGCCCATGCTCAAGGCCGCCGGCGCGCTCTGGCTCTAGTGAGACAATACTTGCATGCTCGCTCAGTATGCAATGCTAGCCTTTTTGACAGTATATATAGAATAACAAGAGATCTAACAGATGAAAAGCCCAGGTTTTTTAATATCCTGTGCCGGCTCCATGGGGAGAAGAGTTAAACTACCCAGCTAATCAACGGCAAGATAATTCAATACTACCCGGCCCCAACGGTAGTACGATGTACCGTAAAAAATCTCTTTATTAAACACGCATATGCATCAGCTGTCTTCTGGTAATAATATCATTCATCTTTTGTAGCGCTTGGATCTATTGTCCGTGCCCATCATCTTCCTTTGCTTACCAGTTTAACTTCTGCAAATCTTGTTCTTCTTAGAGGAGCGTATGCGTTGGATGTAGCCAAGGCGAACCCAGCTTCTGGTTGTCGAGAAGAGGAAGAAATGAGAGAGACGCGTCTAGGGGAGCGATCACGGCGCTTACTCTACCACAAATCATGTTAGCTGTATTAAGTTAGTGCTTGGCTTAGTGCTAGAATGTACTTCCACCGTATCAAAATAAGTGTCTTAACTTTATACTAATTCTAGTACAAAGTTATACTAAGATTGAGACACTTATTTAGGAATGGAGTGAGTACTAGAAGGTCTACAGACCTCACTCTTAATTATCCACCATCTCTTGATGTGTAACTGAACTGTACGAGT | |||||||||
gi|143795776|gb|CJ961704.1|CJ961704 CJ961704 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul27f0 TAGTACAAAGTT-GAGACATTT EST sequence (targeted fragment marked with yellow): ACCAGCAGCTAATGCAGCATGGAGACAATCTAATGGATGAGACTGATCAAGCTCTCGCACGATCTAAACAGACTGTCCAAGAGACGATCAATGTGGGTACCGAAACTGCAGCTGCTCTGAAAGCACAGACAGAGCAAATGAGCAGGGTTGTTAACGAGCTGGATTCCATTCATTTCTCCATGAAAAAGGCATCAAAATTGGTGAAAGAAATTGGTAGGCAGGTTGCGACTGATCGCTGCATCATGGGCTTGCTTTTTCTCATTGTCGCTGGAGTCATAGCTGTAATCATTGTTAAGATTGTAAACCCACACAACAAAGATATTCCTGACCTCCCCGGGCTCGCTCCACCGGTCAGCAGAAGGCTGTTGTCCATTGTAGAGAACAAGTGAGTATCCACACACCACAAGTGTAAAATACCCTGATGAGGCACCGTGTGCGGTCGCTTGGAAGTTCCTTGAATCATGCCGCACACACGTTGTAAACTTGTAATGCTGCCGTACCATCCCATGGGACCCGTGCGCTAAACCGAAGGTTGCCAAACCACTGTAAAATTGTACTCCCTCCGTTCCAAAATAAGTGTCTTAAACTTTGTACTAACTTTAGTATAAAGTTGTACTTGAGTTGAGACACTTATTTGGGACAGAGGGAGTATGTTGTTATTCTCTTGACAAGCAGGCAGGTTTGTTTCTGGCAAGGACCATATGTTCCCTGTGAAAACATTGACAT | |||||||||
gi|222371431|gb|GH732851.1|GH732851 OV.113J09F010313 OV Triticum aestivum cDNA clone OV113J09, mRNA sequence TAGTACAAAGTTGAGACATTT EST sequence (targeted fragment marked with yellow): ACATCCTCCGTTCCAAAATACATGACTCAACTTTGTACTAACTTAGTACAAAATTGAGTCATCTATTTTGGAACGGAGGGAGTACTTCAGAATCGATGGCTTGAATTAAGTTGGCATGCTACCTGAGGATTGAAATAATGTGTACTATTAGATTTTGCTGTTTCAGATTGAACATCGATTTATTCACAGGAAAAAATAGATTGAACATAGCTTTACTGTAGTATTACATTCCAACATACTTTACACGCTCCTAAAAAATCAAGTGCAAAATTACATTAGAGGGGAAATTCAGTAATTGGTTTCTGAAACTAAGTGACATGCACATGTAAAGTTTGTTTGCTTGATGTGCTTTGTATGCATACGTATTGTAGCCATATATATCAACATGTGACAATAGTATTGCGTTTGCCTTGAACACTAAATTCAGTCTTTCAAAAAAAGAAATTTTGTAGCCATAGTCAAGTCTGCTGCCCTGTGCATGAACCAAACACAACATTAGCTTCCTTTTGAATCCTGAAGGCACCAACTACAAATTATTTTAGTGTACGAAAATCAATCATCAAAGTTGCAAAATTGTGTGATTACGAGGAATCTCGTTTCTTAAACATGTGCATCTTTAGAAAATTCTGTATTCATTAATCATTATGAGTGCACAAATAACCAGTAAAATTGTTCTACATGAAGACCAGAGAAG |