miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TAGTACAAAGTTGAGTCACTT
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|143799086|gb|CJ965007.1|CJ965007 CJ965007 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul37g1 

TAGTACAAAGTTGAGTCACTT
||||| ||||||.|| |||||
ATCATATTTCAATTCTGTGAA

EST sequence (targeted fragment marked with yellow):
GGGTCATGGAGATGCACCTCGCCGGCGAGCTCGTGCCCATGCTCAAGGCCGCCGGCGCGCTCTGGCTCTAGTGAGACAATACTTGCATGCTCGCTCAGTATGCAATGCTAGCCTTTTTGACAGTATATATAGAATAACAAGAGATCTAACAGATGAAAAGCCCAGGTTTTTTAATATCCTGTGCCGGCTCCATGGGGAGAAGAGTTAAACTACCCAGCTAATCAACGGCAAGATAATTCAATACTACCCGGCCCCAACGGTAGTACGATGTACCGTAAAAAATCTCTTTATTAAACACGCATATGCATCAGCTGTCTTCTGGTAATAATATCATTCATCTTTTGTAGCGCTTGGATCTATTGTCCGTGCCCATCATCTTCCTTTGCTTACCAGTTTAACTTCTGCAAATCTTGTTCTTCTTAGAGGAGCGTATGCGTTGGATGTAGCCAAGGCGAACCCAGCTTCTGGTTGTCGAGAAGAGGAAGAAATGAGAGAGACGCGTCTAGGGGAGCGATCACGGCGCTTACTCTACCACAAATCATGTTAGCTGTATTAAGTTAGTGCTTGGCTTAGTGCTAGAATGTACTTCCACCGTATCAAAATAAGTGTCTTAACTTTATACTAATTCTAGTACAAAGTTATACTAAGATTGAGACACTTATTTAGGAATGGAGTGAGTACTAGAAGGTCTACAGACCTCACTCTTAATTATCCACCATCTCTTGATGTGTAACTGAACTGTACGAGT


gi|222371431|gb|GH732851.1|GH732851 OV.113J09F010313 OV Triticum aestivum cDNA clone OV113J09, mRNA sequence 

TAGTACAAAGTTGAGTCACTT
||||||||||||||||||  |
ATCATGTTTCAACTCAGTACA

EST sequence (targeted fragment marked with yellow):
ACATCCTCCGTTCCAAAATACATGACTCAACTTTGTACTAACTTAGTACAAAATTGAGTCATCTATTTTGGAACGGAGGGAGTACTTCAGAATCGATGGCTTGAATTAAGTTGGCATGCTACCTGAGGATTGAAATAATGTGTACTATTAGATTTTGCTGTTTCAGATTGAACATCGATTTATTCACAGGAAAAAATAGATTGAACATAGCTTTACTGTAGTATTACATTCCAACATACTTTACACGCTCCTAAAAAATCAAGTGCAAAATTACATTAGAGGGGAAATTCAGTAATTGGTTTCTGAAACTAAGTGACATGCACATGTAAAGTTTGTTTGCTTGATGTGCTTTGTATGCATACGTATTGTAGCCATATATATCAACATGTGACAATAGTATTGCGTTTGCCTTGAACACTAAATTCAGTCTTTCAAAAAAAGAAATTTTGTAGCCATAGTCAAGTCTGCTGCCCTGTGCATGAACCAAACACAACATTAGCTTCCTTTTGAATCCTGAAGGCACCAACTACAAATTATTTTAGTGTACGAAAATCAATCATCAAAGTTGCAAAATTGTGTGATTACGAGGAATCTCGTTTCTTAAACATGTGCATCTTTAGAAAATTCTGTATTCATTAATCATTATGAGTGCACAAATAACCAGTAAAATTGTTCTACATGAAGACCAGAGAAG


gi|143795776|gb|CJ961704.1|CJ961704 CJ961704 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul27f0 

TAGTACAAAGTT-GAGTCACTT
|||||||||||| .|| |||||
ATCATGTTTCAAATTCTGTGAA

EST sequence (targeted fragment marked with yellow):
ACCAGCAGCTAATGCAGCATGGAGACAATCTAATGGATGAGACTGATCAAGCTCTCGCACGATCTAAACAGACTGTCCAAGAGACGATCAATGTGGGTACCGAAACTGCAGCTGCTCTGAAAGCACAGACAGAGCAAATGAGCAGGGTTGTTAACGAGCTGGATTCCATTCATTTCTCCATGAAAAAGGCATCAAAATTGGTGAAAGAAATTGGTAGGCAGGTTGCGACTGATCGCTGCATCATGGGCTTGCTTTTTCTCATTGTCGCTGGAGTCATAGCTGTAATCATTGTTAAGATTGTAAACCCACACAACAAAGATATTCCTGACCTCCCCGGGCTCGCTCCACCGGTCAGCAGAAGGCTGTTGTCCATTGTAGAGAACAAGTGAGTATCCACACACCACAAGTGTAAAATACCCTGATGAGGCACCGTGTGCGGTCGCTTGGAAGTTCCTTGAATCATGCCGCACACACGTTGTAAACTTGTAATGCTGCCGTACCATCCCATGGGACCCGTGCGCTAAACCGAAGGTTGCCAAACCACTGTAAAATTGTACTCCCTCCGTTCCAAAATAAGTGTCTTAAACTTTGTACTAACTTTAGTATAAAGTTGTACTTGAGTTGAGACACTTATTTGGGACAGAGGGAGTATGTTGTTATTCTCTTGACAAGCAGGCAGGTTTGTTTCTGGCAAGGACCATATGTTCCCTGTGAAAACATTGACAT