| mature miRNA: CTCTGTAAACTAATATAAG species: Triticum monococcum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22018126|gb|BQ803157.1|BQ803157 WHE2834_D05_G10ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c CTCTGTAAACTAATATAAG EST sequence (targeted fragment marked with yellow): TGCGCTCGACGACGACCTCAAGCTCGTTTCATGAGAAATCGTTCGCTGACCAAGGACGAGGTGGAGGCCTTCTGGAGGCAGCACAAGAAGCCGGCGCCGGAGGACAACGTCGACGGCGGCGAGACCGTCGTCGCCTCCTCTCCCTGCAAGGGGAGCCCGAGGTCGACCACGCGTCCGCCGACTCTGTCTCATGTCCGTTCGTCGCCGCCGGTGATGACGAGTAGCGTGGACGGCGACGGCGACGGCGAGGCTGCCGCTAGCCCCAGCGCCAGCCGCGACTGGTGGACGAGGAGCAGCTGGGCGTTCCTGAATGAGCCGCCGCCGCAGCAGCGCGAGGGAGGAGGCGTTAGGCAAGGCGCCGCGGCCGCCGTCTGATCATCATCTCTTTAATTACTTCGCTATAAGCTGGCTTTGTATCCCTGTAAATAAGTACTTCTACTCTCTCTGTAAACTAATATAAAAGCGTTTAAATTACTATCTAAACACTCTTTTATTAGTTTACAGAGAGAGTACGTACCAGCCATGGTAATTGGAGTGGTGGTTTTGCTAATGTTTGATTTCTATATGATGTGGAGTGCATGTCACCTTTTGTATTATCACTCATGTAACCTTGGAGA | |||||||||
gi|22017646|gb|BQ802677.1|BQ802677 WHE2828_G05_N10ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c CTCTGTAAACTAATATAAG EST sequence (targeted fragment marked with yellow): TAGCCCCAGCGCCAGCCGCGACTGGTGGACGAGGAGCAGCTGGGCGTTCCTGAATGAGCCGCCGCCGCAGCAGCGCGAGGGAGGAGGCGTTAGGCAAGGCGCCGCGGCCGCCGTCTGATCATCATCTCTTTAATTACTTCGCTATAAGCTGGCTTTGTATCCCTGTAAATAAGTACTTCTACTCTCTCTGTAAACTAATATAAAAGCGTTTAAATTACTATCTAAACACTCTTTTATTAGTTTACAGAGAGAGTACGTACCAGCCATGTAATTGGAGTGGTGGTTTTGCTAATGTTTGATTTCTATATGATGTGGAGTGCATGTCACCTTTTGTATTATCACTCATGTAACCTTGGAGATATACTATGTGTATATGTCACTTTCTGTATTGGCATCTCAGATGCTACAAAAAACGAAAATTCAGGGGAAGCATTTTGGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|31417154|gb|CD492114.1|CD492114 WHE2473_D11_H21ZT Triticum monococcum DV92 early reproductive apex cDNA library Triticum mono CTCTGTAAACTAATATAAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTGTTACATCCAACTGAAGACGGCCGGTCTTGAATCCACTGCNGAGAATTTGAACAGCTAGAGATACAGATGATCAGATACACAACCGAACAGTTCACATAAGATCACAAGAGAGTAGCACACGCGCCTTGTTGCATTATATTACACCACCACCATCTACACACGAACGGCGTTGCCTGCTTTGCCCAGCGACGGAGACGGGAGAATCTCCTACTGAAGTGCCGCGACAACGGTAGATCCTTCCACCATGAAGGTTGCACCACAGATTTCCTCCTCATCTGCAGGCACAGCGGTGACCTTGTTCTTGGGATTCTCGTACGACTTGAGGCCTCCAAGAGCGTTCCAGTAGAAGCAACCTTGCGGGAAAGGCGCCAGTGACTTGCCGCAAGATCCTTTCAGCAGGTCGATGTCGTCGGAGAAGGCGACGCAGCCGTCGGCCGTGATTCCCCAGAAGAGCGGCACCTTGCCCTCCGGGTCGGATGCGACGAGGAGGGAGGAGGTGGACTTGTCNAAGAGCACGAAGGCGTAGCTGCCTGACGATCAGATCCTATTTGCACGCTTCTTTCTCCCTCTGGCTCTGTTTGTAGGGTATATTTTGTTTTGCTGAAACAAAGCCTGGCTCAGGAATCACCTTATATTAGTTTGCAGGTTTTATGTGAACCAGTAATGCTGTCAATTAACTAATACTTAAAATTGTTCGTCAT | |||||||||
gi|25444289|gb|CA722496.1|CA722496 wds1c.pk002.p13.f wds1c Triticum monococcum cDNA clone wds1c.pk002.p13.f 3' end, mRNA sequenc CTCTGTAAACTAATATAAG EST sequence (targeted fragment marked with yellow): TACACTCACTATAGGGCGAATTGGGTACCGGGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAGTATAACTTATTTTTTGGTAAGTAAATCAATGGTCAAATGTTGACCCAAAATACAATAGGGCTAATAAACCCAGATCGAGGTACTTATAAATTGAACTTGAACACTCTTCAATCTTCATCCAACTTTGTAGAGTACTCGCTCCATAAACTAATATAAAAGTGTTTAGATTACTATTTTAGTAATCTAAATGCTCTTATATTAGTTTACAGAGGGAGTATATGCCGTCCGTCCTCACTTACTTGGCCACCGCGGCCTCCTTGCAGTCCTCTTTCCCGAAGGCGGAGACGGGGAAGGTCCTGCCGAGCCCGGTGGGCGTCTTGAAGGTGATCTTGGAGGGGTCATCCTTGTCGATGTACATGTCGCAAAGGGTGATCCAGATGAGGAGCTCCTTGCTCTTGACCCCGGGTCATGCGCTTCATCTTGCGGTCCTCGACAAAGGCCGTCACCTCCGGTGCCGTACGAAAACCTGCCGCCCGATCTGCTTGAAGGGTGTGCGTTGAGCCGCCTTCTTCCGG | |||||||||