miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ACATTATGGGACGGAGGGAGT
species: Triticum turgidum subsp. durum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|197665522|gb|FK827367.1|FK827367 KI7RS-114 KI7RS Triticum turgidum subsp. durum cDNA similar to Glutamine-rich protein, mRNA 

ACATTATGGGACGGAGGGAGT
||||| |||||||||||||||
TGTAAAACCCTGCCTCCCTCA

EST sequence (targeted fragment marked with yellow):
ACTCCCTCCGTCCCAAAATGTAAAACTTTTTTGACACTATGATAGTATCAAAAAACGTCTTACATTTTGGGTCGGAGGAAATACTAGTTTTAAATTGCGTGTTTACAGCCACAATGACAGGACAAGTTATCTTCAAAACATATATAATCAGATAACTAGAGACAAGTTACCAGGCACCAGCCGATGCATCCTCAAGCCTTTTCTCAAGTCGAGTGCACCTGTCTTGCCTAGAGTTCAGATCAGATTGCCACCATCGACGCCGTA


gi|49603782|gb|AJ717200.1|AJ717200 AJ717200 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

ACATTATGGGACGGAGGGAGT
|||||||||||||||||||||
TGTAATACCCTGCCTCCCTCA

EST sequence (targeted fragment marked with yellow):
GGTTCTGAACATTGTAGCGTTTTGTCAATGTTGTTACTTTTTGCTACAAAGTATGTGGAATGGCATCTTTATGATGTTCCTGTTTGAGATAAAACTACATGTTGTCTCTATCGTGCAAGACAAATGCTACAAAAAAAAAGCATTGTATACAGTTGTCCAATGATAAAATGTACTCCCTCCGTCCCATAATGTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTATATTTCAAAAATTGTAGAGCAATTAGTTCTAATGAAACATTGGCACNTTGGTCCTGATTATATATCAGATGCAGATATTCGGATTTTATTTTTGAATCTGATCTTACTTGCGGGGATGGACGTATCACGTATGGGTTCAGGTAAAACTGTTGCAACTTCTGATTGAAGAAGCTAAATTGACATGTCACAGCTCCCAGCATGTACTTCCAATAAGATGCATATCATGGTATTGGGATATATCAGCGTCTGATATATATGTGCATAAGTTGGCAGGGATATATCAGCGTCCGATATAATATATGTGCATCTGTTGGCAGAAATGTCAGATCCGCAAACTGTGATTCACCACTNGTTTTATTTTATTTTTCCTCANCATG


gi|49603502|gb|AJ716920.1|AJ716920 AJ716920 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

ACATTATGGGACGGAGGGAGT
|||||||||||||||||||||
TGTAATACCCTGCCTCCCTCA

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGGTGTTTGGCCCCTTGTGTTCCACATTTGTTGTGTTCTTGGGGCATGCTTCTAGTTTGTCCAAATGTCTCTTCAAGCATTTCAACCTGATGGTTTTCCAATCATGTTAGCTATTGCCTTGGTCATAGAGAAATTATCTTGAAACGTGTATGCAGTATATGAGTGATTTAGCTTTTGAACAGCAATTTTTAGAGCTATGTTCCCTGTCCTGGCACACTGTAGCTTAGGTTATTCCTATATAATACTCCCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGGGCGTAGTTAACGTATTCTCAGTTATGAAGCTGTCCACTTCTTTTCTGAAACTATTTCTCAAATGGAGTTCATCATTGTGGGGGATTTTCATGGGAGAAATGCAACGTGTCTTTGGCAATAGCAGTGATGTAAAGTTCCAAACAAC