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mature miRNA: CCTCCGTCCCATAATAAGTGT
species: Triticum turgidum subsp. durum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|49603475|gb|AJ716893.1|AJ716893 AJ716893 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

CCTCCGTCCCATAATAAGTGT
||||||||||| ||||| |||
GGAGGCAGGGTTTTATTGACA

EST sequence (targeted fragment marked with yellow):
GTATTTATCTGTGTCATAAAAAAGTGATATTTACCTATATACTATTCCTCCGTCCCATAATAAGTGTCTCAACTTTGTAGTAACTCTAGTACAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTACTATATGGCTCTCGTAGCCGTACGTGTGACCTACTACATACCCTAGCTACTGCATGTATTGTTCTAAAAAAAGGCTAATGCATGTACATGCAGTTAAATAAAATGGGCATCCTGTACAGTAAGCTGGAGTACTTAGCACTGGCTACGTACTCCATGCGATGGATAGATGGATCCCTGGCCTTTGCATGATCCCTGTATTTCATTGTACTGTATAATGTATCATATCTGTTGTTTGTACAAAAAAAAAAAAAAAAAAACTCGAG


gi|9426102|gb|BE428259.1|BE428259 MTD005.A09F990616 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone 

CCTCCGTCCCATAATAAGTGT
||||||.|||| |||||||||
GGAGGCGGGGTTTTATTCACA

EST sequence (targeted fragment marked with yellow):
AAAGGTGGCTGACTCGCTTGAGAAAGGAACAGAACATGAGGATGAATACATGATTAGTGAGAAGGAGCTTCTTGTTAACCGGTTCATTTCCGTGCCGAAAGACATGGGGGCATTCAACTGTGGAGCTTTTGTTGCAGGGATTGTAAGGGGCGTATTGGACAATGCTGGCTTTCCCGCGGTTGTGACGGCGCATTTTGTGCCAATTGAAGGCCAGCAGAGGCCCAGGACAACGATCTTGATTAAATTTGCTCAAGAGGTTATACACCGGGAAGCGAGGCTCGGCTGAAGCTCATGCCATCTATGTACACCTCATTGCGGAAGATTTCTTTTATCCACCGAGTTAATCTCGTATTACGACTTTGTACTAAATCTGCGACACTTATTTTGGGGCGGAGGGA