miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCTCCGTCCCATAATGTAAGA
species: Triticum turgidum subsp. durum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|197665522|gb|FK827367.1|FK827367 KI7RS-114 KI7RS Triticum turgidum subsp. durum cDNA similar to Glutamine-rich protein, mRNA 

CCTCCGTCCCATAATGTAAGA
|||||| |||| |||||||||
GGAGGCTGGGTTTTACATTCT

EST sequence (targeted fragment marked with yellow):
ACTCCCTCCGTCCCAAAATGTAAAACTTTTTTGACACTATGATAGTATCAAAAAACGTCTTACATTTTGGGTCGGAGGAAATACTAGTTTTAAATTGCGTGTTTACAGCCACAATGACAGGACAAGTTATCTTCAAAACATATATAATCAGATAACTAGAGACAAGTTACCAGGCACCAGCCGATGCATCCTCAAGCCTTTTCTCAAGTCGAGTGCACCTGTCTTGCCTAGAGTTCAGATCAGATTGCCACCATCGACGCCGTA


gi|39728301|gb|AJ611374.1|AJ611374 AJ611374 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

CCTCCGTCCCATAATGTAAGA
 ||| ||||||||||.|| ||
TGAGCCAGGGTATTATATCCT

EST sequence (targeted fragment marked with yellow):
GGTGAGTTTTGCTGGTACCAAGAGAAGGAGGTTCCTTTTAACCTGCAGGAGCTCTGCCAATGGCAGCGTGCTTTCCTTGACAATGACGTGGTACTGCACGTACGCAAGATGCAGCGAGTGAAATCGGCGCAAGAGGGCATCTTGCAAGCAGCACCAAATCCTATATTATGGGACCGAGTCAAATGTGGCTCGGTGATAGAATTAAGCATGAAGGAGGAAGATACCAGCACCAGCACCAGCAATAAAGACTGCGGCAACGGCGACAACAGTGTGTCCCGGCGAGCGTGAGCAATGGCAGCATCATCTCTGACTCCGAGTACCTGACCAAGACGCTGCCCAGGTCACATGTCAAGGACTTCCTCTTGGACGATGCCGCCCCCTTGGCTGTTGTTGTCGTCTCCTCAAATAAGTCGTATCAGGTAGAGCTGAGGATTAAGGATTAAGTATAAACGTAATGGAGCCCGTTGTATAACAACACAGAGCCGAAGGAGATGCTATTTTATTGTTGCCTTATCTTTGTCAATGCAGTCGAATATGGGTCTATTCTGGTGCCCTGTCTTCATCGTAGCGTGTGTATGTAACATGGGGGCGGCCGTGAGTATAGATCGTCTAGACTACTTTTTCTGGGCTACTAAAATATACGAAGAGACATCAAGGTCAGAAATCAATTAGGGAGGCACTAACATTATGCCNTGATTCAGATGTTGTAAAAAAATGCCTTGATTCAGATGGTTCCG


gi|39730663|gb|AJ613736.1|AJ613736 AJ613736 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

CCTCCGTCCCATAATGTAAGA
|||||||||||.|||.|||||
GGAGGCAGGGTGTTATATTCT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGACGACCTGTCGCCCCATCGCCTGTGTGACTACCTGTACACCCTATCTGAAAGATTCTCACAATTTTACACCAACTGCCAGGTTGTCGGGTCACCGGAGGAAACGAGCCGCCTGTTGCTGTGCCAAGCGTCGGCAGTCGTCATGCGGCAATGCTTCCACCTGCTGGGCATAACACCAGTGCACAAGCTATAGAAGTCGATGGATGCTCTAGTTAGTAAATTATCATTGAACTCATCTAACATGATAGGTTTAGTGGACGCGATCTTGTAAATATTACTCCCTTCGTCCCACAGTATAACTTGAAAAAGGATCTTATATTGTGGGACGGAGGGAGTAGTTGCAAATATCAGTATGTCGTCGATGCCACATAGTAGCTCGCAAGTATGTTTGTCTTTCCTACATCAGCATCAGCATAATAGCAAGGCTGTGGGATTTTATTGTTTGAAACTTTGGTGTGTTCTGGATATATGTTAGTTATAAGGGCAATACAAACGTTCACGAAAAAAAAAAAAAAAAAAAACTCGAG


gi|49603340|gb|AJ716758.1|AJ716758 AJ716758 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

CCTCCGTCCCATAATGTAAGA
|||||.|||||.||. .||.|
GGAGGTAGGGTGTTGGGTTTT

EST sequence (targeted fragment marked with yellow):
GAATTCCGGCACGAGGGCAGGGCCGGCGGTGGATCCGAGCGGCTGGTGGTCGGTTCCCTGTGTCCGGCCTCTCCAGATCTGAAGACGCCTCCTTTGGCTCCTGCTGCGGCCTCTCCTACGCCATGTCCTACCAGATCCGGTGGACGATGTCGTGGTGGTGGGTGGGGAGCCCTGGATCGGGGTAACCTCTTGGCCGGCAGCGGCGGCCACATCGTCAACGGTGCTCCGTGCGCTGCTCCCCTTCCCGAAGGCGACGTTGAGGTCCATCTCCCTCCCCTCCCTCCCTCCCCTGCTCCCGGGTGAAAATCCACAACCTTGGTTGGGCGGCGACGGTGCCTCTNCACCTCCTTCTTGAAGGCATCGTTTTGGGTTGTGGGATGGAGGGTGGCNCTGCGGC


gi|49603502|gb|AJ716920.1|AJ716920 AJ716920 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

CCTCCGTCCCATAATGTAAGA
|||| |||||||||.||||||
GGAGACAGGGTATTGCATTCT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGGTGTTTGGCCCCTTGTGTTCCACATTTGTTGTGTTCTTGGGGCATGCTTCTAGTTTGTCCAAATGTCTCTTCAAGCATTTCAACCTGATGGTTTTCCAATCATGTTAGCTATTGCCTTGGTCATAGAGAAATTATCTTGAAACGTGTATGCAGTATATGAGTGATTTAGCTTTTGAACAGCAATTTTTAGAGCTATGTTCCCTGTCCTGGCACACTGTAGCTTAGGTTATTCCTATATAATACTCCCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGGGCGTAGTTAACGTATTCTCAGTTATGAAGCTGTCCACTTCTTTTCTGAAACTATTTCTCAAATGGAGTTCATCATTGTGGGGGATTTTCATGGGAGAAATGCAACGTGTCTTTGGCAATAGCAGTGATGTAAAGTTCCAAACAAC


gi|164701047|gb|FD473448.1|FD473448 P12S_A07_SP6_049 frumisis1 Triticum turgidum subsp. durum cDNA clone P12S_A07_SP6_049, mRNA 

CCTCCGTCCCATAATGTAAGA
||||||||||| |||.|||||
GGAGGCAGGGTTTTATATTCT

EST sequence (targeted fragment marked with yellow):
ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTATGTTTGTTTGGAG


gi|49603782|gb|AJ717200.1|AJ717200 AJ717200 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

CCTCCGTCCCATAATGTAAGA
|||||||||||||||||||||
GGAGGCAGGGTATTACATTCT

EST sequence (targeted fragment marked with yellow):
GGTTCTGAACATTGTAGCGTTTTGTCAATGTTGTTACTTTTTGCTACAAAGTATGTGGAATGGCATCTTTATGATGTTCCTGTTTGAGATAAAACTACATGTTGTCTCTATCGTGCAAGACAAATGCTACAAAAAAAAAGCATTGTATACAGTTGTCCAATGATAAAATGTACTCCCTCCGTCCCATAATGTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTATATTTCAAAAATTGTAGAGCAATTAGTTCTAATGAAACATTGGCACNTTGGTCCTGATTATATATCAGATGCAGATATTCGGATTTTATTTTTGAATCTGATCTTACTTGCGGGGATGGACGTATCACGTATGGGTTCAGGTAAAACTGTTGCAACTTCTGATTGAAGAAGCTAAATTGACATGTCACAGCTCCCAGCATGTACTTCCAATAAGATGCATATCATGGTATTGGGATATATCAGCGTCTGATATATATGTGCATAAGTTGGCAGGGATATATCAGCGTCCGATATAATATATGTGCATCTGTTGGCAGAAATGTCAGATCCGCAAACTGTGATTCACCACTNGTTTTATTTTATTTTTCCTCANCATG


gi|9427023|gb|BE429180.1|BE429180 MTD015.C06F990621 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone 

CCTCCGTCCCATAATGTAAGA
| |||||||||||||.|||||
GTAGGCAGGGTATTATATTCT

EST sequence (targeted fragment marked with yellow):
GCAGACGAGCCCTAAGAAGACGTTCCGATGCGCCGATGCACGCGTCGACGACGGCACGCCCTGCAAGCCCTGCAAGAAGCACTGATAGCACATGCTCAGAACATAAGATGTTGCACCGAGAATAAAAGCTCGGATGGGTTGAGCAGAGCCGTTGTGGTTGTACGTACACGTGTTCCATGCCCAACAACAATTGTTGTTGTCATCGTCGTCGTTATGCTTTTATCTCTCTCCAACAAAAGCTGTGGTCGTTGCTCCCTGAATAAACACATATTCCCTTCGTTTCATAATGTAAGACATTTTTTGGCACTAGTGTAGTATCAAAAAACGTCTTATATTATGGGACGGATGGAGTACTTGTGTGTCAGTGTATTGCGTCTCTGCTCAATCAAATAAAAA