miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TATATTTTGGGACGGAGGGAG
species: Triticum turgidum subsp. durum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|39732277|gb|AJ615350.1|AJ615350 AJ615350 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TATATTTTGGGACGGAGGGAG
. ||||||||||| ||.||||
GAATAAAACCCTGGCTTCCTC

EST sequence (targeted fragment marked with yellow):
GGTTCAACACGCTCGCAGAGCTATTAGACAGTTTTTCTGATGTCGGCACGGATCAGATCATCGAGGTGATGGTCCGTTCGTCGACCTCGGCCGGCCCTTGTTCGGATGAAATGGTTGAGAACAGGAAGCAGATATTGAGCAGGGTCTTCCTCAAAAGCCTCCAGACTGATGACACNTGTCTTCAGGAAGGTGTCTCGATCTGTTTACNTGCGCGTTCCGTGCAGTCGCCCTGGGTGGCAACGGGACGAAGGGCAGGAAACTCGCCGAGGCGGCCCTGGGGCGCATCGGAGCGACAAAGTTGACCGACCGCGTAGTGAAGGCAGCGGAAGTGCTGATCAGAGTAGCAACAATATCAGAGCAGGTTCATGGCCCGTGGTACAGTCATCTCCTGTAAATGACTTGATTTGTTTTGTGAATCCGTGGTGCTGTGTAAACAGGGTGGGTGATCGTAGCCGCTGGGGCGCACATCGCCGTGCATCCCCGGTGGAAAATTCTGCAATAGTTTTCTTCTACGATCACTGGAACAGTTCTTCTGTTTTTGTCCGTGACCACACGCTGGCTTTTTGTGCACAGTTATCTACTCCTTCGGTCCCAAAATAAGCTAGTACAAAAAAAAAAANAAAAANCTCGAG


gi|164699262|gb|FD468223.1|FD468223 BOT_4_2b BOT Triticum turgidum subsp. durum cDNA clone BOT_4_2b, mRNA sequence 

TATATTTTGGGACGGAGGGAG
  |||||||||| |.||||||
CAATAAAACCCTTCTTCCCTC

EST sequence (targeted fragment marked with yellow):
GGCCGAGGTACAAGCAGTGTTGAAATCCTTTTTGCATAAAATCTACAGGAGGAGGAAATAGGACTATTCTTGCATACAAAAAGATTGTCGGATGGAACAACTTCTTTCCTGTCGGCATGTGCAAGATGAATAACACTCCCTTCTTCCCAAAATAACTGTCGTTGTTTCAGTTCAAATTACAGAGGGAGTATTACTTATGAATGGTCCAGAGTTTTTGCATACCATGTAAAAGTATTAAATAAAATGTACCTGCCCGGGCGGCCGCTCGAAA


gi|197665522|gb|FK827367.1|FK827367 KI7RS-114 KI7RS Triticum turgidum subsp. durum cDNA similar to Glutamine-rich protein, mRNA 

TATATTTTGGGACGGAGGGAG
||.||||||||||||||||||
ATGTAAAACCCTGCCTCCCTC

EST sequence (targeted fragment marked with yellow):
ACTCCCTCCGTCCCAAAATGTAAAACTTTTTTGACACTATGATAGTATCAAAAAACGTCTTACATTTTGGGTCGGAGGAAATACTAGTTTTAAATTGCGTGTTTACAGCCACAATGACAGGACAAGTTATCTTCAAAACATATATAATCAGATAACTAGAGACAAGTTACCAGGCACCAGCCGATGCATCCTCAAGCCTTTTCTCAAGTCGAGTGCACCTGTCTTGCCTAGAGTTCAGATCAGATTGCCACCATCGACGCCGTA