| mature miRNA: TATTTCTTTACAGAAGGAGTA species: Triticum turgidum subsp. durum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49603756|gb|AJ717174.1|AJ717174 AJ717174 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GTTAAGAGAATAACTTGAGGTGTGTCTTTTTATCGAGCCAACGAGGCCACACTCTTTATCAGTTAGAAGTATTAGAGTTGCCATCCCGTGAAGTGGGTTAAGGCACATGAAAGGTGAACATGTGGCACAGAATAATGGAATCGGATTCTTTTATCTGGATTGGGTTGTTTATTTTGCACTTTGGCGATGCACCTTGAAAATATTGCACGATTGATCACTAGAGAAAGTTCAGATCAGACTGATATTTAACAATTCACCTTATAAGAATGAAATGGCATGCACACTCTTTACTAACTGATAACTTAGACCAGAGAAGAGAACCAGAATCTAGCTTCTAAAAGGTACTCCCTCTGTAAAGAAATATAAAAGCGTTTATTAGATCACTGAAGTAGTGATCTAAATGTTCTTATATTTCTTTACAGAAGGAGTAACTTGCTAGATGGCATGTATAAGAAAGCAGCTTGAAGTTGGTCATTTTCTTCCTTTTGTCNGTAGCAGTTCTATCGTTTATCTTCATTTTTTCTCTTGTTACCTAAGATTTGCCACAAAGTGGCATTTTTCATTTTCAGGAGCTTACTGAAAATGGATGTTGCTTTCAGGAACCCTTTGTGAGCATTCCCGAAGACAGAATCCGCGAGGCTCTGNAAAGTTGTTCTAGACACAAGAAACCCNCCCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGGGTTGTTGGATGCTTGAGGAAACTGCAC | |||||||||
gi|164699814|gb|FD468666.1|FD468666 BOT_4_3b BOT Triticum turgidum subsp. durum cDNA clone BOT_4_3b, mRNA sequence TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GGCCGAGGTACAAGGCTACAAAATAATTGCTTCGCTTTTGCAAGTTTTAGAAGAGAAGAAAAATTCTCACAAGGTCTTACAACATTAAGCCAAACAAAATAAAGAATCGGTTGAGGACATTAATGTTATCTCTTATGCAATAGTATTTTCGTGGTGTGATCAGGAAACAATGCATAAGTGGAAGAAAAAAAAAGAGTCATCATCTAAAAAAACTAATATATAGTGCAACATGCCAATAAATGCATATCTCATGCTTTATTCAGTTTTTATTTTTCAAATAAAACTTGTGCAGCACAAAAATTGGCTTCGGCGAGAAGTATTTATTTTAACACCATCAATTACTTAATTCCTGTGACGCGATATAAAAATCTAGAACACCGGCATGGAAGGCAATGTTTGCTTTGCACTTATATTGAGGCAGGGGGCGCCAAATTTGTATCCCTCTTTACATGCCCATGCTGGGGCTGCTTGACAACCAATTCGCAAATACCTGGATGGCCTACTCATAGCCTAAAAGGGTCACCCCAAAGGTCCAAACTGCAGAGGTTTCCTGAGACCAGAATCTCCTGCACAAACTTAATCATCAATTTCACTGAAGACTACTCATCTGCTCCATCTGTAAAGAAATATAAAAACGTTTAGATCATTATTTTATTATATTTCTTTACGGAGGGAGTGCTTTTTTGTAATTAAGTGCTGAACCAATATTAATGTGATCTACCGATGCAGGCTGGTCACCGACATCCCGGG | |||||||||
gi|39728251|gb|AJ611324.1|AJ611324 AJ611324 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GTCGGTTCTTGTATTCTACCCCCTCTGTAAAGAAATATAAGATCGTTTGAGGGAGTAGTTAAAATGGTTTACTACGAGTGATTGTTGGGCAAGTTTTATTCTTTGGAGGGTGTGTGTGTGTTGGTCTTTTTCATTTTGTTGGAAAGGAGATGAAGCAGATCTGGAGGAGGCACTGTTTACATGGGGGCGGCGACACATCGTTCAGCGGGAACGACAACAGCTTGTCCACCGTACCACATCATATAATGATGTTTCTTTGTGGAGGGTAAAACCTGACTAATGATTTGGAATGGCAGGAAGTAGTAATATCGAGGAAATAAAGAAAGCAAGACTTCCATCATGATTATACAAAACTTCCGAATCTAATATATGATCGGAACTTAATATTCAGAAAGTTTTACAATTGTAGAACTCTCTTTATTAAGTTGTTTTAACTTGTATCGTAGTTTTAACTGTTATAAATCTACTCCTGTCAATAGTAGATCTTAGGAATCTATCAACTGAACAATTTCTATGGATGTACTCCATCTGTCCCAAGTTAATATTAAATTGAGTTGTTTATTTAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|164699642|gb|FD468494.1|FD468494 BOT_6_4f BOT Triticum turgidum subsp. durum cDNA clone BOT_6_4f, mRNA sequence TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): ACCGAAAGATACTCCTGTCGTCCCCGGGATGTCGGTGACCAGCCTGCATCGGTAGATCACATTAATATTGGTTCAGCACTTAATTACAAAAAAGCACTCCCTCCGTAAAGAAATATAATAAAATAATGATCTAAACGTTTTTATATTTCTTTACAGATGGAGCAGATGAGTAGTCTTCAGTGAAATTGATGATTAAGTTTGTGCAGGAGATTCTGGTCTCAGGAAACCTCTGCAGTTTGGACCTTTGGGGTGACCCTTTTAGGCTATGAGTAGGCCATCCAGGTATTTGCGAATTGGTTGTCAAGCAGCCCCAGCATGGGCATGTAAAGAGGGATACAAATTTGGCGCCCCCTGCCTCAATATAAGTGCAAAGCAAACATTGCCTTCCATGCCGGTGTTCTAGATTTTTATATCGCGTCACAGGAATTAAGTAATTGATGGTGTTAAAATAAATATTTCTCGCCGAAGCCAATTTTTGTGCTGCACAAGTTTTATTTGAAAAATAAAAACTGAATAAAGCATGAGATATGCATTTATTGGCATGTTGCACTATATATTAGTTTTTTTAGATGATGACTCTTTTTTTTTCTTCCACTTATGCATTGTTTCCTGATCACACCACGAAAATACTATTGCATAAGAGATAACATTAATGTTCTCAACCGATTCTTTATTTTGTTTGGCTTAATGTTGTAAGACCTTGTGAGAATTTTTCTTCTCTTCTAAAACTTGC | |||||||||
gi|49603143|gb|AJ716561.1|AJ716561 AJ716561 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGAGAAGTGGTCGAGCTGGAGGCGTACAGGCAGGGCACCCAGAAGATGGAGCTATGCAACAAGTGGGAGGGTGGCGCCTGCTCCTACGGCGGCCGGTGCCGGTTCGCGCACGGCCTGCAGGATGATGGTTTCTTAATTTCGTTGACTAACCAGGGAGTTCAAGGATGATGACTGAAAGTTTTGTCATTACTGGTTAACACTTGGTGTCTGAAAATGACCGTCATCCCTTAGTGGGCAAAGATGATTTTGTTGAACAGTTTCAGTATATGTTACATACCGTATTCTTTCCAATGTAGAAGGTAGCAGCTGACTCTGCATTGCTGTGGTGCTTATATTATGGAGTAGTTAAGTTATTCTCCATCTGTACAGAAATATAAGAGCAAAACACTTATATTTCTTTACAGAGGGAGTATTCCACAATATTTAGGATGTCAACTTTCAGCCAATTGGTTAGTGGATGTAAGAGCATCTCTAGCCGATCCTTAAAAATCTTTAGAGGATAGTCCAGTCGGATACAAGCTGACTGCTCCTCAGGAAGGCTTGCTGTAGGTTACCAAGCACTAGCAGGCGAGGTATGCACTTGAATTTATTTGCTCTGTATTATGCTATCTTTTTGATCTGCCAGCTAATTTATTGCTTCAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|39730390|gb|AJ613463.1|AJ613463 AJ613463 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCACAAGCTAATCAAGCTCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCGAAGCACTAGATCCTCGATGGCTCGCGTGGCACNTGGTCGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTCGGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCCTCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTCCCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCCACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTTAATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGTTATCTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTTGCTTTTATATTTCCTTGCGGAGGGAGTAGTTTTCTTGCCCCGCATGTTGCTGCTGG | |||||||||
gi|39727918|gb|AJ610991.1|AJ610991 AJ610991 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GTTCAAGCGAGGATGGTGTGGGACTTCTGGCACATCTGCGCTATATTGCGGATCTTGTGATTAAAGCAGCACCTCTGAGCACTGGTTTAGCCGCTGATGTTCATGGACAGCTGTCAGTGGTAAACAAAGGAATGCTCATCGAGCAGAGGCCGGCGAAAGGGCAGAAAGTTTGGAACTTCCATTTTAAGGTGAAGGAAAACGGCGCAGACTTCTTCTACCCAGGGAGCAGACATTAGAACTTTGGCCACAGTAAAACTGCACAGCAGATATCACTTCAGTGATGCCAGTTGATGCGTCGCTCGTTATGTTGAAGTTGCCCTGTTTTAAGGAATATCATGGAAAGGAAAGTAACATTGCCTGGTTCAGGACTCGCATCGTTGCATCTCTTTTTGCCTTTTTTTAGGAAGTTTGTGTTGCCTTTATTCATTGGAAAAGGGGGTGTACACAACATTGTAAGCCTGTGATATGGAGTATTCGAGCAGACGCTAGGGGAACTGCAATGCCAAAACATCAGTACTCCCTTTGTAAAGTTGTGATCTAAAAGGTCTCATATTACTCCCTCCGTAAAGAAATATATGATCGTTTAAATCAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|39729635|gb|AJ612708.1|AJ612708 AJ612708 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGCTAATCAAGCTCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCGAAGCACTAGATCCTCGATGGCTCGCGTGGCACTGGTCGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTCGGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCCTCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTCCCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCCACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTTAATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGNTATCTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTGCTTTTATATTTCCTTGCGGAGNAGTAGTTTCTTGCCGCATGTTGCTGCTGGAANTAGCAGTTTAT | |||||||||
gi|39729422|gb|AJ612495.1|AJ612495 AJ612495 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TATTTCTTTACAGAAGGAGTA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCTGAAGCACTAGATCCTCGATGGCTCGCGTGGCACTGGTCTGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTCGGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCCTCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTCCCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCCACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTTAATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGTTATCTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAAAAAAAAAAAAAAAAAACTCGAG | |||||||||