miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCATCTGTAAAGAAATATGA
species: Triticum turgidum subsp. durum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|49603143|gb|AJ716561.1|AJ716561 AJ716561 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

TCCATCTGTAAAGAAATATGA
||| |||||||||||||||.|
AGGGAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGGAGAAGTGGTCGAGCTGGAGGCGTACAGGCAGGGCACCCAGAAGATGGAGCTATGCAACAAGTGGGAGGGTGGCGCCTGCTCCTACGGCGGCCGGTGCCGGTTCGCGCACGGCCTGCAGGATGATGGTTTCTTAATTTCGTTGACTAACCAGGGAGTTCAAGGATGATGACTGAAAGTTTTGTCATTACTGGTTAACACTTGGTGTCTGAAAATGACCGTCATCCCTTAGTGGGCAAAGATGATTTTGTTGAACAGTTTCAGTATATGTTACATACCGTATTCTTTCCAATGTAGAAGGTAGCAGCTGACTCTGCATTGCTGTGGTGCTTATATTATGGAGTAGTTAAGTTATTCTCCATCTGTACAGAAATATAAGAGCAAAACACTTATATTTCTTTACAGAGGGAGTATTCCACAATATTTAGGATGTCAACTTTCAGCCAATTGGTTAGTGGATGTAAGAGCATCTCTAGCCGATCCTTAAAAATCTTTAGAGGATAGTCCAGTCGGATACAAGCTGACTGCTCCTCAGGAAGGCTTGCTGTAGGTTACCAAGCACTAGCAGGCGAGGTATGCACTTGAATTTATTTGCTCTGTATTATGCTATCTTTTTGATCTGCCAGCTAATTTATTGCTTCAAAAAAAAAAAAAAAAACTCGAG


gi|164699642|gb|FD468494.1|FD468494 BOT_6_4f BOT Triticum turgidum subsp. durum cDNA clone BOT_6_4f, mRNA sequence 

TCCATCTGTAAAGAAATATGA
|||||||||||||||||||.|
AGGTAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
ACCGAAAGATACTCCTGTCGTCCCCGGGATGTCGGTGACCAGCCTGCATCGGTAGATCACATTAATATTGGTTCAGCACTTAATTACAAAAAAGCACTCCCTCCGTAAAGAAATATAATAAAATAATGATCTAAACGTTTTTATATTTCTTTACAGATGGAGCAGATGAGTAGTCTTCAGTGAAATTGATGATTAAGTTTGTGCAGGAGATTCTGGTCTCAGGAAACCTCTGCAGTTTGGACCTTTGGGGTGACCCTTTTAGGCTATGAGTAGGCCATCCAGGTATTTGCGAATTGGTTGTCAAGCAGCCCCAGCATGGGCATGTAAAGAGGGATACAAATTTGGCGCCCCCTGCCTCAATATAAGTGCAAAGCAAACATTGCCTTCCATGCCGGTGTTCTAGATTTTTATATCGCGTCACAGGAATTAAGTAATTGATGGTGTTAAAATAAATATTTCTCGCCGAAGCCAATTTTTGTGCTGCACAAGTTTTATTTGAAAAATAAAAACTGAATAAAGCATGAGATATGCATTTATTGGCATGTTGCACTATATATTAGTTTTTTTAGATGATGACTCTTTTTTTTTCTTCCACTTATGCATTGTTTCCTGATCACACCACGAAAATACTATTGCATAAGAGATAACATTAATGTTCTCAACCGATTCTTTATTTTGTTTGGCTTAATGTTGTAAGACCTTGTGAGAATTTTTCTTCTCTTCTAAAACTTGC


gi|39729316|gb|AJ612389.1|AJ612389 AJ612389 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TCCATCTGTAAAGAAATATGA
||| |||||||||||||||.|
AGGGAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGCAATGAAGCATTTGCTGAAGATACCTCCGAGAGAGAGCATAAAGCCTGAGCAAGGTTCTGGTTGAAGCTTCTATCCACAAAAGAAAGGCACATCTATGAAGTGCCAGTTGGAGGCTTCAAGCCTCATCAAGTCCATGATTGTTATTCTCCCTCCGTAAAAGAATATAAGAGCATTTAGATCACTACTATAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACGTAGTAATTGTGTTGCGTACTTACCCCAGCTGACATATTCTTTTCGTTATATTTTTTCGAATTCATTTTTATTTTTTCACCAACATGTATACTTTATCCACTAGGTGGAATGTTGTCACTGGATAGTATTTGATGATGAAATTACAGATACGCGAAAAAAAAAAAAAAAAAAAAAACTCGAG


gi|9426659|gb|BE428816.1|BE428816 MTD011.B07F990617 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone 

TCCATCTGTAAAGAAATATGA
||| ||||||||  |||||.|
AGGGAGACATTTGATTATATT

EST sequence (targeted fragment marked with yellow):
TGGTGGTTGGTGGTGAGCTGACTCATGCTGTCTTATGGCAGTACCTATGTTGGTGTCATGTCTAGGAAATGGTGGCGTCCTAATGCTGTCTATGACTTGGAATTCCGTTTCTTCTGTTCGATGAGTTAGGTCTTATTGGCTGTGTAATGTTGCTTCTGAATTCAGTGGTGGTGGAGGCCGGAGGCGGATGGTCAGGCGTATTGGCTTTGTGTTGAGGCTGCTGGATTAAGAGCCTTCTTTTTTACTCCCTCTGTAATCTAATATAAAGGCGTCTAGAATACTAAAGTAGTGATCTAAAGGCTCTTATATTAGTTTACAGAGGGAGTAGCTCTAAGCGCTGTTTTGGAGCTGTCATGTTTGGACTTGGATGTAGTGTTGTGTTTGTTGGAGTTTGGTT


gi|39727130|gb|AJ610203.1|AJ610203 AJ610203 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TCCATCTGTAAAGAAATATGA
|||||||| |||.|||.|| |
AGGTAGACNTTTTTTTGTAAT

EST sequence (targeted fragment marked with yellow):
GGAATTCGGCACGAGGGGTAGTAGTAGCTCTTGGGCGTGCCTTTAAATCTGGAAATTTGATGGCCACAGATGGGTCAGTGATTGGCGAACGAGACAAATTTGATTGCAGAGAGCTTAAGTACTCCACTTGTAAAATTACCAAGGCTGGAATTGGAGGTCCCCTCTTTGATTTGAATGGGAACTTTGTTGGCATGAACTTCTATGACTCGGACGGAACTCCTTACCTNCCAAGTGACATAATTCAGAATCTATTGAGGAGTTTTTATGCANAGCGGACTGCTGCTGCTGGAATTACNGAGAAACCTAATTATCGTTNGCCGGCCCTNANCCATATTGGTATTATCCCAGTCATCACCGGAAGCCTGANCCAAAACACACATCATTTGATTAGGTTTGAAGCTAATGTTTTTTTNCAGATGGAAACGAATGTAACCTGNCTATGAATATATGATAAATGGGGGTCANNCAAAAATTGTCCTT


gi|49603756|gb|AJ717174.1|AJ717174 AJ717174 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

TCCATCTGTAAAGAAATATGA
||| |||||||||||||||.|
AGGAAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GTTAAGAGAATAACTTGAGGTGTGTCTTTTTATCGAGCCAACGAGGCCACACTCTTTATCAGTTAGAAGTATTAGAGTTGCCATCCCGTGAAGTGGGTTAAGGCACATGAAAGGTGAACATGTGGCACAGAATAATGGAATCGGATTCTTTTATCTGGATTGGGTTGTTTATTTTGCACTTTGGCGATGCACCTTGAAAATATTGCACGATTGATCACTAGAGAAAGTTCAGATCAGACTGATATTTAACAATTCACCTTATAAGAATGAAATGGCATGCACACTCTTTACTAACTGATAACTTAGACCAGAGAAGAGAACCAGAATCTAGCTTCTAAAAGGTACTCCCTCTGTAAAGAAATATAAAAGCGTTTATTAGATCACTGAAGTAGTGATCTAAATGTTCTTATATTTCTTTACAGAAGGAGTAACTTGCTAGATGGCATGTATAAGAAAGCAGCTTGAAGTTGGTCATTTTCTTCCTTTTGTCNGTAGCAGTTCTATCGTTTATCTTCATTTTTTCTCTTGTTACCTAAGATTTGCCACAAAGTGGCATTTTTCATTTTCAGGAGCTTACTGAAAATGGATGTTGCTTTCAGGAACCCTTTGTGAGCATTCCCGAAGACAGAATCCGCGAGGCTCTGNAAAGTTGTTCTAGACACAAGAAACCCNCCCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGGGTTGTTGGATGCTTGAGGAAACTGCAC