| mature miRNA: TCCCTCCGTAAAGAAATATAA species: Triticum turgidum subsp. durum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|39730390|gb|AJ613463.1|AJ613463 AJ613463 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCACAAGCTAATCAAGCTCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCGAAGCACTAGATCCTCGATGGCTCGCGTGGCACNTGGTCGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTCGGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCCTCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTCCCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCCACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTTAATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGTTATCTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTTGCTTTTATATTTCCTTGCGGAGGGAGTAGTTTTCTTGCCCCGCATGTTGCTGCTGG | |||||||||
gi|39729316|gb|AJ612389.1|AJ612389 AJ612389 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCAATGAAGCATTTGCTGAAGATACCTCCGAGAGAGAGCATAAAGCCTGAGCAAGGTTCTGGTTGAAGCTTCTATCCACAAAAGAAAGGCACATCTATGAAGTGCCAGTTGGAGGCTTCAAGCCTCATCAAGTCCATGATTGTTATTCTCCCTCCGTAAAAGAATATAAGAGCATTTAGATCACTACTATAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACGTAGTAATTGTGTTGCGTACTTACCCCAGCTGACATATTCTTTTCGTTATATTTTTTCGAATTCATTTTTATTTTTTCACCAACATGTATACTTTATCCACTAGGTGGAATGTTGTCACTGGATAGTATTTGATGATGAAATTACAGATACGCGAAAAAAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|39728251|gb|AJ611324.1|AJ611324 AJ611324 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GTCGGTTCTTGTATTCTACCCCCTCTGTAAAGAAATATAAGATCGTTTGAGGGAGTAGTTAAAATGGTTTACTACGAGTGATTGTTGGGCAAGTTTTATTCTTTGGAGGGTGTGTGTGTGTTGGTCTTTTTCATTTTGTTGGAAAGGAGATGAAGCAGATCTGGAGGAGGCACTGTTTACATGGGGGCGGCGACACATCGTTCAGCGGGAACGACAACAGCTTGTCCACCGTACCACATCATATAATGATGTTTCTTTGTGGAGGGTAAAACCTGACTAATGATTTGGAATGGCAGGAAGTAGTAATATCGAGGAAATAAAGAAAGCAAGACTTCCATCATGATTATACAAAACTTCCGAATCTAATATATGATCGGAACTTAATATTCAGAAAGTTTTACAATTGTAGAACTCTCTTTATTAAGTTGTTTTAACTTGTATCGTAGTTTTAACTGTTATAAATCTACTCCTGTCAATAGTAGATCTTAGGAATCTATCAACTGAACAATTTCTATGGATGTACTCCATCTGTCCCAAGTTAATATTAAATTGAGTTGTTTATTTAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|39728890|gb|AJ611963.1|AJ611963 AJ611963 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCTACGCGGCCGGGTCGAGGTGGAGGCAGACGACGGTGAGCAGGAAAGACCACCGGGAGAAAGGGGACGAGACGGACGGCTTCTACGGCGGCATCAGGAAGCTCCAGACCAAAGACGAGATCTCAACGTGGCGGAGATTCTGGCCGGTGGACGTGCTCAGCTGAACATGGACATATATCTGCCGCTCCGTTGTACAGCTGCTTGCCGGTGGTCGCCGAGCTGCGGCGTTCCTCTGAAGAATGCACCCACCTGGTGGTGCTGCTGCTGCTGCCGCGCTTCTGAATGTTTTTGGTACTACTGGAAAATTCAGATGGGTACGCCGGATTCCAGAGTCCCAGCAGCAGTGAGAGGCAACGATAGGCTTGTATGTGAATGATGATGTACAGCTCTACCAAGTCTTCAGTTTGCACCGTGCTGCTGCTGGATCCTAGACTAGTATTCCCTCTGGAAACAAATATAAGAGTGTTTAGAACACTATTTTAGTGATCTAAACGCTCTTACATTTCTTTACCGAGGGAGTAGATTTCTGGTATAGACCGATGTCCAGTTGTATTTTTTCGCAGTCATTGTAGCCAGNTAGTAGTATATCCAGTTACGCGGGNTG | |||||||||
gi|49603143|gb|AJ716561.1|AJ716561 AJ716561 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGAGAAGTGGTCGAGCTGGAGGCGTACAGGCAGGGCACCCAGAAGATGGAGCTATGCAACAAGTGGGAGGGTGGCGCCTGCTCCTACGGCGGCCGGTGCCGGTTCGCGCACGGCCTGCAGGATGATGGTTTCTTAATTTCGTTGACTAACCAGGGAGTTCAAGGATGATGACTGAAAGTTTTGTCATTACTGGTTAACACTTGGTGTCTGAAAATGACCGTCATCCCTTAGTGGGCAAAGATGATTTTGTTGAACAGTTTCAGTATATGTTACATACCGTATTCTTTCCAATGTAGAAGGTAGCAGCTGACTCTGCATTGCTGTGGTGCTTATATTATGGAGTAGTTAAGTTATTCTCCATCTGTACAGAAATATAAGAGCAAAACACTTATATTTCTTTACAGAGGGAGTATTCCACAATATTTAGGATGTCAACTTTCAGCCAATTGGTTAGTGGATGTAAGAGCATCTCTAGCCGATCCTTAAAAATCTTTAGAGGATAGTCCAGTCGGATACAAGCTGACTGCTCCTCAGGAAGGCTTGCTGTAGGTTACCAAGCACTAGCAGGCGAGGTATGCACTTGAATTTATTTGCTCTGTATTATGCTATCTTTTTGATCTGCCAGCTAATTTATTGCTTCAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|164699814|gb|FD468666.1|FD468666 BOT_4_3b BOT Triticum turgidum subsp. durum cDNA clone BOT_4_3b, mRNA sequence TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GGCCGAGGTACAAGGCTACAAAATAATTGCTTCGCTTTTGCAAGTTTTAGAAGAGAAGAAAAATTCTCACAAGGTCTTACAACATTAAGCCAAACAAAATAAAGAATCGGTTGAGGACATTAATGTTATCTCTTATGCAATAGTATTTTCGTGGTGTGATCAGGAAACAATGCATAAGTGGAAGAAAAAAAAAGAGTCATCATCTAAAAAAACTAATATATAGTGCAACATGCCAATAAATGCATATCTCATGCTTTATTCAGTTTTTATTTTTCAAATAAAACTTGTGCAGCACAAAAATTGGCTTCGGCGAGAAGTATTTATTTTAACACCATCAATTACTTAATTCCTGTGACGCGATATAAAAATCTAGAACACCGGCATGGAAGGCAATGTTTGCTTTGCACTTATATTGAGGCAGGGGGCGCCAAATTTGTATCCCTCTTTACATGCCCATGCTGGGGCTGCTTGACAACCAATTCGCAAATACCTGGATGGCCTACTCATAGCCTAAAAGGGTCACCCCAAAGGTCCAAACTGCAGAGGTTTCCTGAGACCAGAATCTCCTGCACAAACTTAATCATCAATTTCACTGAAGACTACTCATCTGCTCCATCTGTAAAGAAATATAAAAACGTTTAGATCATTATTTTATTATATTTCTTTACGGAGGGAGTGCTTTTTTGTAATTAAGTGCTGAACCAATATTAATGTGATCTACCGATGCAGGCTGGTCACCGACATCCCGGG | |||||||||
gi|9426659|gb|BE428816.1|BE428816 MTD011.B07F990617 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone TCCCTCCGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): TGGTGGTTGGTGGTGAGCTGACTCATGCTGTCTTATGGCAGTACCTATGTTGGTGTCATGTCTAGGAAATGGTGGCGTCCTAATGCTGTCTATGACTTGGAATTCCGTTTCTTCTGTTCGATGAGTTAGGTCTTATTGGCTGTGTAATGTTGCTTCTGAATTCAGTGGTGGTGGAGGCCGGAGGCGGATGGTCAGGCGTATTGGCTTTGTGTTGAGGCTGCTGGATTAAGAGCCTTCTTTTTTACTCCCTCTGTAATCTAATATAAAGGCGTCTAGAATACTAAAGTAGTGATCTAAAGGCTCTTATATTAGTTTACAGAGGGAGTAGCTCTAAGCGCTGTTTTGGAGCTGTCATGTTTGGACTTGGATGTAGTGTTGTGTTTGTTGGAGTTTGGTT | |||||||||